FvH4_5g26390

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000155
Physical Location & Seq
Reverse (-)
17898953 .. 17900572
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26390.t1

Sequence Viewer

Length: 930 bp
ATGACTTGGATTGATACAGCAACAAGCTGCAATGTTGAAGTGCTTGATCTTCACTTAAATATGCTATCCAAGGGGTTAGTAGAACTGTCGTCTTCCATTTTCGGTTGTGGATCTTTGAGGTCATTATTGGTGAGGATGGAGGAGAGTTTCAAAGTGCCATCCTTTCCTTGTCCCAATAATCTCCAACGCTTGAACTTGACTTATGTCAGGTTGACAGACGGGTTTTCCAAATGGATCACAAGTTCCTGCAAATGCATTAAGGAAATAAAGCTTAAAAGTTTTTACGCAGAAAATATAACCATTGAGAGCTCATCTTTGGAAACATTTACTTTCGAGGCCCGTTCCAACCTCTGCTGTCTTAAAATCTTAGAAAAGGCTGAGATTTTTCTAGACGCCTGGTCGGCTAGTGTCTGTGACTTTCATAACATATTTGAGTTCTTTTGCAGCTTATGCAGGGTTGAAGTACTTATTCTAAGTGACAGGACCATCAAGGCTTTGTTCAGGGAAGGTTCTATGGCTACACCAATCTTTGATACTACTTACTTACGTATAAATACTGCGAACCTGAATAATACTCTAGTCCCAGCAATGGTCTCTCTGATGAGAGGAATGTCAAATTTGAATACTTTGGATATAAAGTCTGACTCTTCCTTCCTCTTCCTCGAACCGAAATCATGCGGATTTAATGGGAAATACTGGAAATCCCAAAATCTGGATTTTGTAAATCAGCTTAAGGAGGTAACAATAGAACTTTCAAATGGTTACAATTCATGGCAGTTGGCAAGGTTTATTCTCGAGCATGCTCAGAATCTGAAGAAGATGATCATATTTTATTTACCCAAAAAAAGCCATGTAATCGATAAGGTGAGAAACAACAAGAAGGTCTCCTCTGCCACAATCCACTTTCACAAGAAACGATGGAGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

310

Amino Acids

35.46

Weight (kDa)

8.98

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 712
AciI CCGC 1 cut(s) 678
AclWI GGATC 2 cut(s) 118, 242
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 833
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 589, 712
AflII CTTAAG 1 cut(s) 731
AgsI TTSAA 6 cut(s) 38, 151, 193, 461, 622, 756
AhdI GACNNNNNGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 5 cut(s) 27, 271, 309, 447, 730
AluI AGCT 5 cut(s) 27, 271, 309, 447, 730
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 598, 889
AlwI GGATC 2 cut(s) 118, 242
AlwNI CAGNNNCTG 1 cut(s) 811
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 27, 444
ApoI RAATTY 1 cut(s) 616
AspS9I GGNCC 2 cut(s) 337, 483
AsuHPI GGTGA 2 cut(s) 142, 877
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 14, 456
BccI CCATC 4 cut(s) 130, 166, 494, 912
BciT130I CCWGG 1 cut(s) 397
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 2 cut(s) 598, 889
BfaI CTAG 3 cut(s) 389, 405, 578
BfrI CTTAAG 1 cut(s) 731
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 2 cut(s) 28, 445
BlsI GCNGC 2 cut(s) 29, 446
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 397
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 2 cut(s) 337, 483
BmrFI CCNGG 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 858
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 2 cut(s) 598, 889
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 712
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 2 cut(s) 37, 594
BseBI CCWGG 1 cut(s) 397
BseCI ATCGAT 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 141, 158
BseLI CCNNNNNNNGG 2 cut(s) 589, 712
BseMI GCAATG 2 cut(s) 37, 594
BseMII CTCAG 2 cut(s) 369, 818
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 2 cut(s) 155, 877
BseXI GCAGC 2 cut(s) 14, 456
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 858
BsiHKAI GWGCWC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 794
BslFI GGGAC 2 cut(s) 156, 566
BslI CCNNNNNNNGG 2 cut(s) 589, 712
BsmAI GTCTC 2 cut(s) 598, 889
BsmFI GGGAC 2 cut(s) 156, 566
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 2 cut(s) 598, 889
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 4 cut(s) 46, 110, 234, 822
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 370, 817
BspDI ATCGAT 1 cut(s) 858
BspPI GGATC 2 cut(s) 118, 242
BspTI CTTAAG 1 cut(s) 731
BspTNI GGTCTC 2 cut(s) 598, 889
BsrDI GCAATG 2 cut(s) 37, 594
BsrI ACTGG 1 cut(s) 701
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 4 cut(s) 46, 110, 234, 822
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 652, 662
BstACI GRCGYC 1 cut(s) 393
BstAFI CTTAAG 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 4 cut(s) 367, 378, 473, 804
BstF5I GGATG 2 cut(s) 141, 158
BstKTI GATC 4 cut(s) 49, 113, 237, 825
BstMAI GTCTC 2 cut(s) 598, 889
BstMBI GATC 4 cut(s) 46, 110, 234, 822
BstMWI GCNNNNNNNGC 2 cut(s) 401, 450
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 803
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 395
BstSNI TACGTA 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 14, 456
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 858
BsuRI GGCC 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 858
BtsCI GGATG 2 cut(s) 141, 158
Cac8I GCNNGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 811
Cfr13I GGNCC 2 cut(s) 337, 483
ClaI ATCGAT 1 cut(s) 858
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 464
CviAII CATG 4 cut(s) 675, 771, 800, 851
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 367, 378, 473, 804
DpnI GATC 4 cut(s) 48, 112, 236, 824
DpnII GATC 4 cut(s) 46, 110, 234, 822
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 652, 662
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 2 cut(s) 652, 662
Ecl136II GAGCTC 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 2 cut(s) 598, 889
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 833
Eco88I CYCGRG 1 cut(s) 794
EcoICRI GAGCTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 678, 774, 803, 854
FaqI GGGAC 2 cut(s) 156, 566
FatI CATG 4 cut(s) 674, 770, 799, 850
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 2 cut(s) 28, 445
FokI GGATG 2 cut(s) 145, 148
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 28, 445
FspBI CTAG 3 cut(s) 389, 405, 578
GluI GCNGC 2 cut(s) 28, 445
GsaI CCCAGC 1 cut(s) 587
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 4 cut(s) 678, 774, 803, 854
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 644, 808
HphI GGTGA 2 cut(s) 142, 877
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 4 cut(s) 600, 643, 807, 813
Hpy188III TCNNGA 3 cut(s) 389, 713, 794
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 500, 661, 874
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 5 cut(s) 30, 249, 255, 444, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 450
HpyF3I CTNAG 4 cut(s) 367, 378, 473, 804
HpySE526I ACGT 1 cut(s) 547
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 4 cut(s) 678, 774, 803, 854
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 4 cut(s) 46, 110, 234, 822
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 2 cut(s) 14, 456
MaeI CTAG 3 cut(s) 389, 405, 578
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 4 cut(s) 413, 476, 739, 761
MalI GATC 4 cut(s) 48, 112, 236, 824
MboI GATC 4 cut(s) 46, 110, 234, 822
MboII GAAGA 6 cut(s) 41, 84, 639, 649, 826, 829
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 2 cut(s) 616, 766
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 208, 369
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 6 cut(s) 56, 258, 273, 360, 684, 732
MspCI CTTAAG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 397
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 401, 450
NdeII GATC 4 cut(s) 46, 110, 234, 822
NlaIII CATG 4 cut(s) 678, 774, 803, 854
NmuCI GTSAC 2 cut(s) 413, 476
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 803
PaeI GCATGC 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 794
PfeI GAWTC 1 cut(s) 808
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 2 cut(s) 29, 446
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 548
PshAI GACNNNNGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 395
PspPI GGNCC 2 cut(s) 337, 483
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 6 cut(s) 56, 258, 273, 360, 684, 732
SatI GCNGC 2 cut(s) 28, 445
Sau3AI GATC 4 cut(s) 46, 110, 234, 822
Sau96I GGNCC 2 cut(s) 337, 483
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 1 cut(s) 311
Sfr274I CTCGAG 1 cut(s) 794
SinI GGWCC 1 cut(s) 483
SlaI CTCGAG 1 cut(s) 794
SmlI CTYRAG 2 cut(s) 731, 794
SmoI CTYRAG 2 cut(s) 731, 794
SnaBI TACGTA 1 cut(s) 548
SphI GCATGC 1 cut(s) 803
Sse9I AATT 2 cut(s) 616, 766
SsiI CCGC 1 cut(s) 678
SspMI CTAG 3 cut(s) 389, 405, 578
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 550
TaqI TCGA 4 cut(s) 333, 663, 795, 858
TasI AATT 2 cut(s) 616, 766
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 808
Tru1I TTAA 6 cut(s) 56, 258, 273, 360, 684, 732
Tru9I TTAA 6 cut(s) 56, 258, 273, 360, 684, 732
TseFI GTSAC 2 cut(s) 413, 476
TseI GCWGC 2 cut(s) 27, 444
Tsp45I GTSAC 2 cut(s) 413, 476
TspDTI ATGAA 2 cut(s) 410, 759
Van91I CCANNNNNTGG 1 cut(s) 712
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 616
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 1 cut(s) 803
XhoI CTCGAG 1 cut(s) 794
XspI CTAG 3 cut(s) 389, 405, 578
ZrmI AGTACT 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.