RLG00000023951

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30357725 .. 30360080
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023951

Sequence Viewer

Length: 858 bp
ATGAACAAAATTATGGTTCTCTTCCTGCTCTCTCTACTGCGAAACTCGACCAACGAGAATGGAGGCACATTCACCCATTTCAGCTCCGGCGTGATCCTACAAGATAGAAGGCCTAAGTTGAGGGGAGTTGGAGCTCCTACCAAGTGTAGGATAGACAGATTTACAAGCCTTCCGGACCATCATGTTCATCACATACTTTCCTTTGTTGCCATCACTGACCTTACTCGTTTCGGTTGCGCCTCTAAAAAGTGCAGAGAGCTTTATCTGTCAACTCCCTCGTTGAATTTTAACGGATTTTCTCGTGCCAATTTGGATAATGGTGATAAGCGATTAGAGTTGTTGAGTTCTTTGGATAGGTTCTTATTAGTTCATCGAGGGGCTATGTACAAGGGCGGTTCCATGCCAGCACCATTAGAAAATGTTCATTACTTGTCTATTCATATTGGAGATTTTCTTGACACCCTAGTCCTCCCAATGGCTTTGCTTCTTCAAGGAATTCCTAATTTGACTACTTTAGACATGAAGTCTGACCCCTTCTTCCTTGACCCAGAAACTGATTGTTCTGGGTTTAAAATGGGATTTTGGAAGGTGCAAAGACTTGATTTTGTTCATCAACTTAGAGAAGTAACCATTGAGCTATCCAGTGGATCCAATGGAACCGAGTTTGCAAGGAAGATCAAAACAGAGGAACTGAAAAGCAAAGAGGAAGAAGGGTTGCCAGATAATCAATCATTAAAAGGTGCTAACAGGATACAGGATCATAGAATCAGAAGTGGAAGTTTTACGGGGATTGTTGAATCTCCTACAGAGTTTCTCTCTCCACCTTTAGATGCTGAATCAATCCTTTCAAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

286

Amino Acids

31.92

Weight (kDa)

7.76

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 1 cut(s) 393
AclWI GGATC 4 cut(s) 88, 642, 655, 765
AcsI RAATTY 2 cut(s) 283, 495
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 147, 475
AgsI TTSAA 4 cut(s) 283, 491, 797, 849
AhdI GACNNNNNGTC 1 cut(s) 523
AluBI AGCT 4 cut(s) 84, 134, 259, 637
AluI AGCT 4 cut(s) 84, 134, 259, 637
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 4 cut(s) 88, 642, 655, 765
AlwNI CAGNNNCTG 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 283, 495
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 64, 332
AvaII GGWCC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 136
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 136
BccI CCATC 2 cut(s) 186, 218
BciVI GTATCC 1 cut(s) 744
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 804
BfuI GTATCC 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 397, 649, 658
BmsI GCATC 1 cut(s) 820
BplI GAGNNNNNCTC 2 cut(s) 800, 832
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 475
Bse1I ACTGG 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 147, 475
BseNI ACTGG 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 2 cut(s) 87, 173
BslI CCNNNNNNNGG 2 cut(s) 147, 475
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 136
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 4 cut(s) 93, 647, 675, 757
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 397, 649, 658
BspPI GGATC 4 cut(s) 88, 642, 655, 765
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 1 cut(s) 642
BssMI GATC 4 cut(s) 93, 647, 675, 757
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 114, 617
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 4 cut(s) 96, 650, 678, 760
BstMBI GATC 4 cut(s) 93, 647, 675, 757
BstSFI CTRYAG 1 cut(s) 804
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 213, 649
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 385
CviAII CATG 4 cut(s) 182, 400, 520, 855
CviJI RGCY 8 cut(s) 84, 112, 134, 168, 259, 380, 479, 637
CviKI_1 RGCY 8 cut(s) 84, 112, 134, 168, 259, 380, 479, 637
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 114, 617
DpnI GATC 4 cut(s) 95, 649, 677, 759
DpnII GATC 4 cut(s) 93, 647, 675, 757
DraI TTTAAA 1 cut(s) 571
DrdI GACNNNNNNGTC 1 cut(s) 464
DriI GACNNNNNGTC 1 cut(s) 523
DseDI GACNNNNNNGTC 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 134
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 4 cut(s) 185, 403, 523, 858
FaiI YATR 9 cut(s) 14, 183, 194, 383, 401, 441, 521, 762, 856
FatI CATG 4 cut(s) 181, 399, 519, 854
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 87, 173
HhaI GCGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 185, 403, 523, 858
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 3 cut(s) 765, 797, 836
HpaII CCGG 2 cut(s) 87, 173
HphI GGTGA 2 cut(s) 64, 332
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 529, 770
Hpy188III TCNNGA 2 cut(s) 173, 455
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 5 cut(s) 102, 179, 544, 580, 704
HpyCH4V TGCA 3 cut(s) 252, 592, 668
HpyF3I CTNAG 2 cut(s) 114, 617
Hsp92II CATG 4 cut(s) 185, 403, 523, 858
HspAI GCGC 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 93, 647, 675, 757
LmnI GCTCC 3 cut(s) 89, 131, 139
LweI GCATC 1 cut(s) 820
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 625
MalI GATC 4 cut(s) 95, 649, 677, 759
MboI GATC 4 cut(s) 93, 647, 675, 757
MboII GAAGA 5 cut(s) 13, 479, 529, 685, 719
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 5 cut(s) 9, 283, 307, 495, 502
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 8 cut(s) 56, 114, 250, 286, 368, 479, 679, 697
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 288, 570, 734
MspI CCGG 2 cut(s) 87, 173
NdeII GATC 4 cut(s) 93, 647, 675, 757
NlaIII CATG 4 cut(s) 185, 403, 523, 858
NlaIV GGNNCC 3 cut(s) 397, 649, 658
PceI AGGCCT 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 765, 797, 836
Psp124BI GAGCTC 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 397, 649, 658
PspPI GGNCC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 647
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 288, 570, 734
Sau3AI GATC 4 cut(s) 93, 647, 675, 757
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 136
SetI ASST 9 cut(s) 86, 136, 222, 261, 359, 591, 639, 742, 826
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 1 cut(s) 175
Sse9I AATT 5 cut(s) 9, 283, 307, 495, 502
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 136
StuI AGGCCT 1 cut(s) 112
TaqI TCGA 2 cut(s) 47, 373
TasI AATT 5 cut(s) 9, 283, 307, 495, 502
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 3 cut(s) 765, 797, 836
Tru1I TTAA 3 cut(s) 288, 570, 734
Tru9I TTAA 3 cut(s) 288, 570, 734
TscAI CASTG 2 cut(s) 220, 649
TspDTI ATGAA 7 cut(s) 17, 176, 359, 413, 428, 536, 599
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 220, 649
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 2 cut(s) 283, 495
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.