RchiOBHm_Chr7g0205941

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000155
Physical Location & Seq
Forward (+)
23635337 .. 23636378
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18428

Sequence Viewer

Length: 504 bp
ATGGATGATGGGTTTGGAAAATGGATCTCATGCTCATGCAAATTCATTAAGGAACTATTGTCAGAAAATGTTCATGTGGGAAGTTTCCCACTTGAAAGCTCGTCTTTGGAATCATTTACATTGGTGTTTACCTATAATAGTGACCCCTGCCATTTTAGCATCTCAGGTGAGAAACTTGCAGAGATAAGTATAGAGTGGGAAAATAGTCAAGCTAGCAGCTCTATTACCAAATCATTAAATGCTTATACCCCAAATCTGAAGTATTTTAAATGGATTGGGAATTTGTTGAATTACCAAAATTTGGGGAAATTTATGCGTTTAGAAAAAGCTCATATCTTTCTGAAGCAAAAGGGAGATGAATATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGAGCGGGAGACTATTAAGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTACCTGGGTGTGCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

167

Amino Acids

19.1

Weight (kDa)

6.88

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 301, 478
AccBSI CCGCTC 1 cut(s) 426
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 4 cut(s) 41, 280, 298, 308
AcuI CTGAAG 2 cut(s) 278, 362
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 301, 478
AgsI TTSAA 2 cut(s) 95, 289
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 99, 212, 219, 329
AluI AGCT 4 cut(s) 99, 212, 219, 329
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 4 cut(s) 41, 280, 298, 308
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 2, 472
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 478
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 2 cut(s) 10, 483
BseLI CCNNNNNNNGG 2 cut(s) 301, 478
BseMII CTCAG 3 cut(s) 177, 413, 462
BseXI GCAGC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 301, 478
BsmAI GTCTC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 426
BspCNI CTCAG 3 cut(s) 176, 414, 461
BspLI GGNNCC 1 cut(s) 459
BspOI GCTAGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 214, 467
BstDEI CTNAG 3 cut(s) 163, 422, 448
BstF5I GGATG 2 cut(s) 10, 483
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BtsCI GGATG 2 cut(s) 10, 483
Cac8I GCNNGC 2 cut(s) 214, 467
Csp6I GTAC 1 cut(s) 482
CviAII CATG 5 cut(s) 30, 36, 74, 462, 466
CviJI RGCY 4 cut(s) 99, 212, 219, 329
CviKI_1 RGCY 4 cut(s) 99, 212, 219, 329
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 3 cut(s) 163, 422, 448
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DraI TTTAAA 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 278, 362
EcoRII CCWGG 1 cut(s) 487
EcoT22I ATGCAT 2 cut(s) 379, 467
FaeI CATG 5 cut(s) 33, 39, 77, 465, 469
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 5 cut(s) 29, 35, 73, 461, 465
FauI CCCGC 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 17, 490
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 217
Hin1II CATG 5 cut(s) 33, 39, 77, 465, 469
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 4 cut(s) 64, 258, 342, 423
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 448
HpyCH4V TGCA 6 cut(s) 39, 179, 377, 393, 465, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 3 cut(s) 163, 422, 448
Hsp92II CATG 5 cut(s) 33, 39, 77, 465, 469
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 150, 160, 388, 435, 474
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 426
MboI GATC 1 cut(s) 24
MflI RGATCY 1 cut(s) 24
MluCI AATT 5 cut(s) 41, 280, 289, 298, 308
MnlI CCTC 1 cut(s) 376
Mph1103I ATGCAT 2 cut(s) 379, 467
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 6 cut(s) 48, 236, 267, 408, 437, 502
MslI CAYNNNNRTG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 1 cut(s) 24
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 5 cut(s) 33, 39, 77, 465, 469
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 2 cut(s) 379, 467
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 110
PflMI CCANNNNNTGG 2 cut(s) 301, 478
PkrI GCNGC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 459
PsuI RGATCY 1 cut(s) 24
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 6 cut(s) 48, 236, 267, 408, 437, 502
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 489
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 34
SphI GCATGC 1 cut(s) 469
Sse9I AATT 5 cut(s) 41, 280, 289, 298, 308
SsiI CCGC 1 cut(s) 426
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 487
TasI AATT 5 cut(s) 41, 280, 289, 298, 308
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 6 cut(s) 48, 236, 267, 408, 437, 502
Tru9I TTAA 6 cut(s) 48, 236, 267, 408, 437, 502
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 34, 62, 372
Van91I CCANNNNNTGG 2 cut(s) 301, 478
XapI RAATTY 4 cut(s) 41, 280, 298, 308
XceI RCATGY 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 2 cut(s) 379, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.