RLG00000004282

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000155
Physical Location & Seq
Forward (+)
57975012 .. 57976908
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004282

Sequence Viewer

Length: 639 bp
ATGGAACGCCAGCATAAGGTATTGGCAACTACAAGTAATCAAGGCCAAGGTGCTAGCAGTGAGAGTTTAGTTGATAGATTTAGTTGTCTTCCGGAAGAAGTTGTCTGTCACATTCTTTCCTATCTCAATGCATTGGATCTCATTCAAGCGAGCAGTGTGTCAAAACGATGCAGAATGTTATATGTTTCAGTCCCGGGATTAAATTTCGATGTAAATGCGCTGCCCGGAGGGAAATGCTGGTGGAAGCGATCAAAATTGTTGAATCATTTGGATAGTGAAATGCCAAATTTGAGTACTTTAAACATGAAGTGTGAGCCGAACACCAGGCAACTAAAATCTGTGGAACCGACTCGTGTATCTGTGGGTAAAAAGTGGAACGCCCAAAGCGTGGCTTGTATTGACCAACTTAAGGCGGCGACATTAGAGATTTCCTATGGAAATAGTGAATTGGAGTTAGCGAGGTACTTGTTGGAGGATGCTAAGAAGTTGAGAAAGATGGTCTTACAATTGAGTGCCTGGTCATACTCTCGGAAGAAATTGAAGCTACCGAGGGAGTTGCCGTATCCATCAAATCTTATTAGGGCAGTAAACGAAGACAGGATTAATTCTACTGCCACAATTGTCTTTGAGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

213

Amino Acids

23.86

Weight (kDa)

9.23

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 59 3.1e-09 F-box domain
F-box-like PF12937 27 - 58 9.9e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 388
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 202, 286
AfaI GTAC 2 cut(s) 295, 464
AfiI CCNNNNNNNGG 3 cut(s) 16, 388, 409
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 146, 262, 541
AjnI CCWGG 2 cut(s) 323, 515
AluBI AGCT 1 cut(s) 544
AluI AGCT 1 cut(s) 544
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 220, 632
ApoI RAATTY 2 cut(s) 202, 286
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 220
AsuC2I CCSGG 3 cut(s) 194, 195, 225
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 339, 372
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 80, 600
BbvI GCAGC 2 cut(s) 207, 619
BccI CCATC 2 cut(s) 490, 574
BceAI ACGGC 1 cut(s) 544
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 538, 572
BciT130I CCWGG 2 cut(s) 325, 517
BciVI GTATCC 1 cut(s) 573
BcnI CCSGG 3 cut(s) 194, 195, 225
BfaI CTAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 407
BfuI GTATCC 1 cut(s) 573
BisI GCNGC 3 cut(s) 221, 414, 633
BlsI GCNGC 3 cut(s) 222, 415, 634
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 5 cut(s) 194, 195, 225, 325, 517
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 5 cut(s) 194, 195, 225, 325, 517
BmsI GCATC 2 cut(s) 158, 466
BmtI GCTAGC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 80, 600
BpuMI CCSGG 3 cut(s) 194, 195, 225
BsaJI CCNNGG 3 cut(s) 46, 193, 548
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 388, 409
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 2 cut(s) 325, 517
BseDI CCNNGG 3 cut(s) 46, 193, 548
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 3 cut(s) 16, 388, 409
BseXI GCAGC 2 cut(s) 207, 619
BshFI GGCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 3 cut(s) 92, 194, 225
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 16, 388, 409
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 136, 248
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 46, 193, 548
BssMI GATC 2 cut(s) 136, 248
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 325, 517
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 11, 55, 151
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 481
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 139, 251
BstMBI GATC 2 cut(s) 136, 248
BstNI CCWGG 2 cut(s) 325, 517
BstSCI CCNGG 5 cut(s) 192, 193, 223, 323, 515
BstV1I GCAGC 2 cut(s) 207, 619
BstV2I GAAGAC 2 cut(s) 80, 600
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 2 cut(s) 64, 160
BtsIMutI CAGTG 2 cut(s) 64, 160
Cac8I GCNNGC 3 cut(s) 11, 55, 151
CfoI GCGC 1 cut(s) 220
Cfr9I CCCGGG 1 cut(s) 193
Csp6I GTAC 2 cut(s) 294, 463
CviAII CATG 1 cut(s) 304
CviJI RGCY 5 cut(s) 45, 316, 392, 544, 632
CviKI_1 RGCY 5 cut(s) 45, 316, 392, 544, 632
CviQI GTAC 2 cut(s) 294, 463
DdeI CTNAG 1 cut(s) 480
DpnI GATC 2 cut(s) 138, 250
DpnII GATC 2 cut(s) 136, 248
DraI TTTAAA 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 323, 515
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 15, 181, 183, 305, 435, 523
FalI AAGNNNNNCTT 4 cut(s) 376, 408, 485, 517
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 221, 414, 633
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 3 cut(s) 221, 414, 633
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 219
GluI GCNGC 3 cut(s) 221, 414, 633
HaeIII GGCC 1 cut(s) 45
HapII CCGG 3 cut(s) 92, 194, 225
HhaI GCGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 262, 349
HpaII CCGG 3 cut(s) 92, 194, 225
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 589
HpyCH4V TGCA 2 cut(s) 131, 171
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 136, 248
Lsp1109I GCAGC 2 cut(s) 207, 619
LweI GCATC 2 cut(s) 158, 466
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 138, 250
MboI GATC 2 cut(s) 136, 248
MboII GAAGA 4 cut(s) 80, 107, 544, 605
MfeI CAATTG 2 cut(s) 506, 618
MflI RGATCY 1 cut(s) 136
MluCI AATT 8 cut(s) 202, 254, 286, 446, 506, 536, 604, 618
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 5 cut(s) 221, 453, 466, 543, 622
Mph1103I ATGCAT 1 cut(s) 133
MroI TCCGGA 1 cut(s) 91
MseI TTAA 5 cut(s) 200, 299, 408, 603, 637
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 3 cut(s) 92, 194, 225
MspR9I CCNGG 5 cut(s) 194, 195, 225, 325, 517
MunI CAATTG 2 cut(s) 506, 618
MvaI CCWGG 2 cut(s) 325, 517
NciI CCSGG 3 cut(s) 194, 195, 225
NdeII GATC 2 cut(s) 136, 248
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 388
PkrI GCNGC 3 cut(s) 222, 415, 634
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 323, 515
PspGI CCWGG 2 cut(s) 323, 515
PspN4I GGNNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 2 cut(s) 295, 464
RsaNI GTAC 2 cut(s) 294, 463
SaqAI TTAA 5 cut(s) 200, 299, 408, 603, 637
SatI GCNGC 3 cut(s) 221, 414, 633
Sau3AI GATC 2 cut(s) 136, 248
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 5 cut(s) 194, 195, 225, 325, 517
SetI ASST 4 cut(s) 21, 52, 464, 546
SfaNI GCATC 2 cut(s) 158, 466
SmaI CCCGGG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 8 cut(s) 202, 254, 286, 446, 506, 536, 604, 618
SsiI CCGC 1 cut(s) 413
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 5 cut(s) 192, 193, 223, 323, 515
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 207
TasI AATT 8 cut(s) 202, 254, 286, 446, 506, 536, 604, 618
TatI WGTACW 1 cut(s) 293
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 5 cut(s) 200, 299, 408, 603, 637
Tru9I TTAA 5 cut(s) 200, 299, 408, 603, 637
TscAI CASTG 2 cut(s) 64, 160
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 220, 632
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 320
TspMI CCCGGG 1 cut(s) 193
TspRI CASTG 2 cut(s) 64, 160
Van91I CCANNNNNTGG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 407
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 202, 286
XmaI CCCGGG 1 cut(s) 193
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.