FvH4_5g20621

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000155
Physical Location & Seq
Forward (+)
12241754 .. 12242458
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20621.t1

Sequence Viewer

Length: 705 bp
ATGAACCACAAGTATAAGATATTTGCAACTGCAAGTTCTCAAACTCCAGAAGCTTGTAGGAAGAGCACAGTCGACAGATTTAGTTATCTTCCCGACAACTTGGCTCATCACATACCGTCAGGCTTCAGTTTTAGACAACTTGTTCAAGTGGGCAGCGTGTCCAAAAGATGCCGAGGTTTCTATCTATCAACCCCATCATTGTATTTTAATTCTGGGGATGCAGTAAGCAGGCAGGATCAGTTTAACCTGTTGAATTCTATAGATAGGTTCATGATTCTTCATGGGGATAATAGGATACAGCAATTTCGTATTAATTGGAACTTCTATGCAGGCCTCTCTGAAGAGGTGTTCCGAATAGCGACCTGGATCCATATTGCATTAAGGTGTAATGTTGAAGTGCTTGAGCTTCAATTGAGATTGCACAATTCAGATAGGGTGATGCTAGAATTTTCATATTCTATCTATTCTTCTGAATCTTTGAGGTCTCTATTCATCAACACAGATACAATTCTTAGAGCACCCACCTTAGTTTCTCATAGTAATCTCCAAAACTTGAAGTTGAGAGATGTTACAATAGATGATGGGTTTTGCAAATGGATCTCCTGCTCGTGCAAATGCCTTAAGGAATTACGGTATGACACATTGATTTGCATCTTTAAAGTTGTGATTCACCAGTTTGTTATTCTATTAGAAACTAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

235

Amino Acids

27.25

Weight (kDa)

9.04

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AclWI GGATC 4 cut(s) 243, 361, 374, 605
AcsI RAATTY 2 cut(s) 253, 446
AcuI CTGAAG 2 cut(s) 109, 360
AflII CTTAAG 1 cut(s) 620
AgsI TTSAA 5 cut(s) 146, 253, 395, 410, 556
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 2 cut(s) 53, 406
AluI AGCT 2 cut(s) 53, 406
Alw21I GWGCWC 2 cut(s) 68, 520
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 4 cut(s) 243, 361, 374, 605
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 253, 446
AseI ATTAAT 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 448, 662
BamHI GGATCC 1 cut(s) 366
BauI CACGAG 1 cut(s) 607
Bbv12I GWGCWC 2 cut(s) 68, 520
BbvI GCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 202, 575
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 443, 696
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 4 cut(s) 158, 208, 429, 660
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 650
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 650
BseNI ACTGG 1 cut(s) 673
BseXI GCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 2 cut(s) 68, 520
BsmAI GTCTC 1 cut(s) 489
BsnI GGCC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 68, 520
Bsp143I GATC 3 cut(s) 235, 366, 597
BspANI GGCC 1 cut(s) 333
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 4 cut(s) 243, 361, 374, 605
BspQI GCTCTTC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 489
BsrI ACTGG 1 cut(s) 673
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 235, 366, 597
BssSI CACGAG 1 cut(s) 607
Bst2BI CACGAG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 70, 117, 633
Bst6I CTCTTC 2 cut(s) 56, 336
BstAFI CTTAAG 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 230, 331
BstDEI CTNAG 2 cut(s) 512, 526
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 3 cut(s) 238, 369, 600
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 3 cut(s) 235, 366, 597
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 366, 597
BstYI RGATCY 2 cut(s) 366, 597
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 230, 331
CciI TCATGA 1 cut(s) 270
CviAII CATG 2 cut(s) 271, 281
CviJI RGCY 5 cut(s) 53, 104, 123, 333, 406
CviKI_1 RGCY 5 cut(s) 53, 104, 123, 333, 406
DdeI CTNAG 2 cut(s) 512, 526
DpnI GATC 3 cut(s) 237, 368, 599
DpnII GATC 3 cut(s) 235, 366, 597
DraI TTTAAA 1 cut(s) 658
Eam1104I CTCTTC 2 cut(s) 56, 336
EarI CTCTTC 2 cut(s) 56, 336
Eco147I AGGCCT 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 489
Eco57I CTGAAG 2 cut(s) 109, 360
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 274, 284
FatI CATG 2 cut(s) 270, 280
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 2 cut(s) 443, 696
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 333
Hin1II CATG 2 cut(s) 274, 284
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 3 cut(s) 274, 473, 667
HphI GGTGA 2 cut(s) 448, 662
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 340, 353, 430, 472
Hpy188III TCNNGA 3 cut(s) 47, 92, 271
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 70, 117, 633
HpyCH4V TGCA 9 cut(s) 26, 32, 221, 329, 377, 421, 591, 612, 651
HpyF3I CTNAG 2 cut(s) 512, 526
Hsp92II CATG 2 cut(s) 274, 284
Kzo9I GATC 3 cut(s) 235, 366, 597
LguI GCTCTTC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 4 cut(s) 158, 208, 429, 660
MaeI CTAG 2 cut(s) 443, 696
MaeIII GTNAC 1 cut(s) 568
MalI GATC 3 cut(s) 237, 368, 599
MboI GATC 3 cut(s) 235, 366, 597
MboII GAAGA 5 cut(s) 73, 80, 269, 353, 459
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 2 cut(s) 366, 597
MhlI GDGCHC 2 cut(s) 68, 520
MluCI AATT 9 cut(s) 208, 253, 302, 313, 410, 424, 446, 507, 626
MnlI CCTC 4 cut(s) 167, 337, 344, 474
MseI TTAA 6 cut(s) 207, 243, 312, 380, 621, 657
MslI CAYNNNNRTG 1 cut(s) 382
MspCI CTTAAG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 364
NdeII GATC 3 cut(s) 235, 366, 597
NlaIII CATG 2 cut(s) 274, 284
NlaIV GGNNCC 1 cut(s) 368
NmeAIII GCCGAG 1 cut(s) 197
PagI TCATGA 1 cut(s) 270
PceI AGGCCT 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 274, 473, 667
PkrI GCNGC 1 cut(s) 155
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 368
PsuI RGATCY 2 cut(s) 366, 597
RseI CAYNNNNRTG 1 cut(s) 382
SalI GTCGAC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 6 cut(s) 207, 243, 312, 380, 621, 657
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 3 cut(s) 235, 366, 597
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 2 cut(s) 68, 520
SfaNI GCATC 4 cut(s) 158, 208, 429, 660
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 401, 620
SmoI CTYRAG 2 cut(s) 401, 620
Sse9I AATT 9 cut(s) 208, 253, 302, 313, 410, 424, 446, 507, 626
SseBI AGGCCT 1 cut(s) 333
SspMI CTAG 2 cut(s) 443, 696
StuI AGGCCT 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 70, 117, 633
TaqI TCGA 1 cut(s) 72
TasI AATT 9 cut(s) 208, 253, 302, 313, 410, 424, 446, 507, 626
TfiI GAWTC 3 cut(s) 274, 473, 667
Tru1I TTAA 6 cut(s) 207, 243, 312, 380, 621, 657
Tru9I TTAA 6 cut(s) 207, 243, 312, 380, 621, 657
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 5 cut(s) 17, 259, 269, 441, 481
Vha464I CTTAAG 1 cut(s) 620
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 253, 446
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 2 cut(s) 443, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.