Rh7DG232300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000155
Physical Location & Seq
Forward (+)
23004239 .. 23004970
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG232300.1

Sequence Viewer

Length: 402 bp
ATGGTTTCTCTTCTGAGAGGAATGCCTAATTTGAGTACTTTGTACATAAAATCTTACCCTTCCTTGCACATTGGTAAACCGAAAGCATGTGGATTTAAGAGTAAATACTGGAAATCCCATAAGCTGGATTGTGTTCATCAGCTTCAGGATGTATCTATAGCGCTTTCCACTGGTTATATTAACAATGCCTTGGATTTAGTAAGATATATTCTCGAGAATGCCTCGAATTTGAAACAAATGATCATATTTTATTTACCCCGCCAATCCTATGTTATAGGGAGGGTAAACAAATTCAAGAAGATTTCTTCTGCCATTGTTGTGTTTAAGGAAAGAGAATTGAATGATGATGGTGTAATGGGTAAGAGTTACCATCGGGTTTTAAATAGGTTGCATTGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

9.89

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AciI CCGC 1 cut(s) 259
AcsI RAATTY 2 cut(s) 226, 290
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 2 cut(s) 37, 44
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 232, 295, 340
AluBI AGCT 2 cut(s) 124, 142
AluI AGCT 2 cut(s) 124, 142
Ama87I CYCGRG 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 162
ApoI RAATTY 2 cut(s) 226, 290
AspLEI GCGC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 212
BccI CCATC 2 cut(s) 341, 378
BclI TGATCA 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 113, 175
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 113, 175
BsiHKCI CYCGRG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 2 cut(s) 27, 223
BsoBI CYCGRG 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 2 cut(s) 113, 175
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 36, 43
CviAII CATG 1 cut(s) 87
CviJI RGCY 2 cut(s) 124, 142
CviKI_1 RGCY 2 cut(s) 124, 142
CviQI GTAC 2 cut(s) 36, 43
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 90
FaiI YATR 9 cut(s) 47, 88, 120, 158, 177, 207, 245, 270, 275
FatI CATG 1 cut(s) 86
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 240
FokI GGATG 1 cut(s) 161
GlaI GCGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 164
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 77, 286
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 4 cut(s) 146, 212, 214, 295
Hpy8I GTNNAC 2 cut(s) 77, 286
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 67, 391
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 4 cut(s) 94, 110, 131, 156
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 297, 310
MluCI AATT 4 cut(s) 28, 226, 290, 335
MnlI CCTC 3 cut(s) 11, 232, 273
MseI TTAA 4 cut(s) 96, 180, 324, 380
MslI CAYNNNNRTG 1 cut(s) 317
Mva1269I GAATGC 2 cut(s) 27, 223
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 90
NspI RCATGY 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 212
PctI GAATGC 2 cut(s) 27, 223
PflMI CCANNNNNTGG 1 cut(s) 124
RsaI GTAC 2 cut(s) 37, 44
RsaNI GTAC 2 cut(s) 36, 43
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 4 cut(s) 96, 180, 324, 380
Sau3AI GATC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 37
SetI ASST 3 cut(s) 126, 144, 389
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 4 cut(s) 28, 226, 290, 335
SsiI CCGC 1 cut(s) 259
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 2 cut(s) 213, 224
TasI AATT 4 cut(s) 28, 226, 290, 335
TatI WGTACW 2 cut(s) 35, 42
Tru1I TTAA 4 cut(s) 96, 180, 324, 380
Tru9I TTAA 4 cut(s) 96, 180, 324, 380
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 124
XapI RAATTY 2 cut(s) 226, 290
XceI RCATGY 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 212
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.