Rroxscaffold_3G00251880

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000155
Physical Location & Seq
Reverse (-)
45895129 .. 45896862
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251880.1

Sequence Viewer

Length: 1158 bp
ATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATACAAAAGATGGGGCAACACCTGAATTGCCATCTTGCATCTATTGTTGTGAATCTTTGAGGTCTCTGTTGATCAGGACAGAGACGGTTCTTAAAGCACCCTCCTTTGCTTGTTCCAATAATCTCCAGTACTTGAAGTTGACTAGTGTTAGAATGGATGATGGGTTTGGCAAATGGATCTCATGCTCATGCAAATTCATTAAGGAACTATTGTTAGAAAATGTTCATGTCGGAAGTTTCACCATTGAAAGCTCGTCTTTGGAATCATTTACATTGGTGTATACCTATAATAGTGACCTCTGCCATTTTAGCATCTCAGGTGAGAAACTTGCAGAGATAAGTATAGAGTGGGAACATAGTCAAGCTAGCAGCAGTATTACCAAATCATTAAATGTTTATGCCCCAAATCTGAAGTATTTTAAATGGATTGGGAATTTGTTGAATTACCAAAACTTGGGGAAATTTTTGTGTTTAGAAAAAGCTCATATCTTTCTGAAGCAAAAGGGAGATGAATATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAGTCACTTGTTCTGAGTGGGGAGGCTATTAAGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTACTTACTTGGGTGTGCATATTAAGAGCTTGACTGATGACCTAGTCCCTGCAATGGTCTCTCTTCTGAGAGGAGTGCCTAATCTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTTAAACCGAAAGCATGCGGTTTTAAGAGGAAATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCTATAGCACTCTCCACCGGTTATCCTACAAATGCCTTGGAGTTAGCGACATATATTCTTGAGCATGCTCAGAAGTTGAAGAAAATGGTCATATGTTATTTACCTCGCCAGTCCTATATTATAGAGAAGGTAAATAGAAGCAAGAAAATTTCCTCTGCAACTGTTGTCTTTAAGGAAAGGGGAGTGAATGACAATGAAGCAATGGGTGAAAGTTATTATTTTGAGCTATTTCACTTGTACGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

385

Amino Acids

43.79

Weight (kDa)

7.87

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 162 2.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 520, 698, 880
AccI GTMKAC 1 cut(s) 347
AciI CCGC 1 cut(s) 846
AclWI GGATC 3 cut(s) 7, 20, 251
AcsI RAATTY 4 cut(s) 260, 499, 527, 1056
AcuI CTGAAG 3 cut(s) 497, 581, 809
AfaI GTAC 4 cut(s) 197, 703, 800, 1148
AfiI CCNNNNNNNGG 4 cut(s) 520, 698, 757, 880
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 6 cut(s) 41, 67, 202, 314, 508, 988
AhlI ACTAGT 1 cut(s) 209
AluBI AGCT 6 cut(s) 318, 431, 548, 732, 898, 1135
AluI AGCT 6 cut(s) 318, 431, 548, 732, 898, 1135
Alw26I GTCTC 3 cut(s) 135, 143, 766
AlwI GGATC 3 cut(s) 7, 20, 251
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 4 cut(s) 260, 499, 527, 1056
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
AsiGI ACCGGT 1 cut(s) 926
Asp700I GAANNNNTTC 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 298, 398, 1127
AsuNHI GCTAGC 1 cut(s) 431
BamHI GGATCC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BbsI GAAGAC 1 cut(s) 797
BbvI GCAGC 1 cut(s) 447
BccI CCATC 4 cut(s) 71, 106, 221, 692
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 135, 143, 766
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 3 cut(s) 210, 432, 746
BfmI CTRYAG 2 cut(s) 619, 912
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
BmcAI AGTACT 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 14, 679
BmsI GCATC 2 cut(s) 114, 387
BmtI GCTAGC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 797
BpmI CTGGAG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 668
BpuEI CTTGAG 3 cut(s) 74, 920, 989
BsaI GGTCTC 2 cut(s) 135, 766
BsaJI CCNNGG 1 cut(s) 945
BsaWI WCCGGW 1 cut(s) 926
Bsc4I CCNNNNNNNGG 4 cut(s) 520, 698, 757, 880
Bse118I RCCGGY 1 cut(s) 926
Bse1I ACTGG 3 cut(s) 193, 869, 1018
Bse3DI GCAATG 3 cut(s) 40, 762, 1116
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 2 cut(s) 229, 703
BseLI CCNNNNNNNGG 4 cut(s) 520, 698, 757, 880
BseMI GCAATG 3 cut(s) 40, 762, 1116
BseMII CTCAG 5 cut(s) 396, 632, 682, 761, 992
BseNI ACTGG 3 cut(s) 193, 869, 1018
BseRI GAGGAG 2 cut(s) 789, 917
BseXI GCAGC 1 cut(s) 447
BshTI ACCGGT 1 cut(s) 926
BsiSI CCGG 1 cut(s) 927
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 4 cut(s) 520, 698, 757, 880
BsmAI GTCTC 3 cut(s) 135, 143, 766
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 734
Bso31I GGTCTC 2 cut(s) 135, 766
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 4 cut(s) 12, 49, 138, 243
BspACI CCGC 1 cut(s) 846
BspCNI CTCAG 5 cut(s) 395, 633, 681, 762, 991
BspLI GGNNCC 2 cut(s) 14, 679
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 3 cut(s) 7, 20, 251
BspTNI GGTCTC 2 cut(s) 135, 766
BsrDI GCAATG 3 cut(s) 40, 762, 1116
BsrFI RCCGGY 1 cut(s) 926
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 3 cut(s) 193, 869, 1018
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 1 cut(s) 945
BssMI GATC 4 cut(s) 12, 49, 138, 243
BssNAI GTATAC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 945
Bst1107I GTATAC 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 154, 1072
Bst6I CTCTTC 1 cut(s) 771
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 4 cut(s) 433, 687, 844, 975
BstDEI CTNAG 5 cut(s) 382, 641, 668, 770, 978
BstF5I GGATG 2 cut(s) 229, 703
BstKTI GATC 4 cut(s) 15, 52, 141, 246
BstMAI GTCTC 3 cut(s) 135, 143, 766
BstMBI GATC 4 cut(s) 12, 49, 138, 243
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNSI RCATGY 3 cut(s) 689, 846, 977
BstSFI CTRYAG 2 cut(s) 619, 912
BstV1I GCAGC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 2 cut(s) 12, 243
BstYI RGATCY 2 cut(s) 12, 243
BstZ17I GTATAC 1 cut(s) 348
BtsCI GGATG 2 cut(s) 229, 703
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 4 cut(s) 433, 687, 844, 975
Cfr10I RCCGGY 1 cut(s) 926
Csp6I GTAC 4 cut(s) 196, 702, 799, 1147
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 7 cut(s) 249, 255, 293, 682, 686, 843, 974
CviJI RGCY 7 cut(s) 318, 431, 548, 653, 732, 898, 1135
CviKI_1 RGCY 7 cut(s) 318, 431, 548, 653, 732, 898, 1135
CviQI GTAC 4 cut(s) 196, 702, 799, 1147
DdeI CTNAG 5 cut(s) 382, 641, 668, 770, 978
DpnI GATC 4 cut(s) 14, 51, 140, 245
DpnII GATC 4 cut(s) 12, 49, 138, 243
DraI TTTAAA 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 945
Eco31I GGTCTC 2 cut(s) 135, 766
Eco57I CTGAAG 3 cut(s) 497, 581, 809
EcoT14I CCWWGG 1 cut(s) 945
EcoT22I ATGCAT 2 cut(s) 598, 687
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 7 cut(s) 252, 258, 296, 685, 689, 846, 977
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 734
FatI CATG 7 cut(s) 248, 254, 292, 681, 685, 842, 973
FauNDI CATATG 1 cut(s) 1001
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 2 cut(s) 236, 710
Fsp4HI GCNGC 1 cut(s) 436
FspBI CTAG 3 cut(s) 210, 432, 746
GluI GCNGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 176
HapII CCGG 1 cut(s) 927
Hin1II CATG 7 cut(s) 252, 258, 296, 685, 689, 846, 977
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 119, 329
HpaII CCGG 1 cut(s) 927
HphI GGTGA 3 cut(s) 298, 398, 1127
Hpy166II GTNNAC 2 cut(s) 207, 348
Hpy188I TCNGA 8 cut(s) 299, 477, 561, 642, 771, 789, 981, 1157
Hpy188III TCNNGA 4 cut(s) 53, 142, 881, 968
Hpy8I GTNNAC 2 cut(s) 207, 348
HpyAV CCTTC 3 cut(s) 668, 825, 1030
HpyCH4III ACNGT 2 cut(s) 154, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 5 cut(s) 382, 641, 668, 770, 978
Hsp92II CATG 7 cut(s) 252, 258, 296, 685, 689, 846, 977
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 12, 49, 138, 243
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 2 cut(s) 114, 387
MaeI CTAG 3 cut(s) 210, 432, 746
MaeIII GTNAC 2 cut(s) 359, 630
MalI GATC 4 cut(s) 14, 51, 140, 245
MboI GATC 4 cut(s) 12, 49, 138, 243
MboII GAAGA 3 cut(s) 758, 802, 1000
MflI RGATCY 2 cut(s) 12, 243
MluCI AATT 7 cut(s) 92, 260, 499, 508, 527, 805, 1056
MmeI TCCRAC 1 cut(s) 277
Mph1103I ATGCAT 2 cut(s) 598, 687
MroXI GAANNNNTTC 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 1 cut(s) 927
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeI CATATG 1 cut(s) 1001
NdeII GATC 4 cut(s) 12, 49, 138, 243
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 7 cut(s) 252, 258, 296, 685, 689, 846, 977
NlaIV GGNNCC 2 cut(s) 14, 679
NmuCI GTSAC 2 cut(s) 359, 630
NsiI ATGCAT 2 cut(s) 598, 687
NspI RCATGY 3 cut(s) 689, 846, 977
PaeI GCATGC 3 cut(s) 689, 846, 977
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 119, 329
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 3 cut(s) 520, 698, 880
PinAI ACCGGT 1 cut(s) 926
PkrI GCNGC 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 14, 679
PsuI RGATCY 2 cut(s) 12, 243
PsyI GACNNNGTC 1 cut(s) 746
RsaI GTAC 4 cut(s) 197, 703, 800, 1148
RsaNI GTAC 4 cut(s) 196, 702, 799, 1147
RseI CAYNNNNRTG 1 cut(s) 253
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 4 cut(s) 12, 49, 138, 243
ScaI AGTACT 1 cut(s) 197
SfaNI GCATC 2 cut(s) 114, 387
SfcI CTRYAG 2 cut(s) 619, 912
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 3 cut(s) 53, 899, 968
SmoI CTYRAG 3 cut(s) 53, 899, 968
SpeI ACTAGT 1 cut(s) 209
SphI GCATGC 3 cut(s) 689, 846, 977
Sse9I AATT 7 cut(s) 92, 260, 499, 508, 527, 805, 1056
SsiI CCGC 1 cut(s) 846
SspMI CTAG 3 cut(s) 210, 432, 746
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 2 cut(s) 154, 1072
TasI AATT 7 cut(s) 92, 260, 499, 508, 527, 805, 1056
TatI WGTACW 2 cut(s) 195, 798
TfiI GAWTC 2 cut(s) 119, 329
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 359, 630
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 2 cut(s) 359, 630
TspDTI ATGAA 5 cut(s) 253, 281, 591, 881, 1119
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 3 cut(s) 520, 698, 880
XapI RAATTY 4 cut(s) 260, 499, 527, 1056
XceI RCATGY 3 cut(s) 689, 846, 977
XmiI GTMKAC 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 3 cut(s) 210, 432, 746
ZrmI AGTACT 1 cut(s) 197
Zsp2I ATGCAT 2 cut(s) 598, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.