Rmu_sc0033900.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033900.1
OG0000155
Physical Location & Seq
Reverse (-)
2 .. 770
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033900.1_g000001.1.cds

Sequence Viewer

Length: 769 bp
atggaagatagggggaagcgtaagttattggctactactgcaagtcgtcaaggccaagcagttagagctgctaccgagggtttgattgataggctgagtaatcttccggatcatgttgctcatcacattctttcgttccttgctattaaagaccttacttgtttcgggtgtgtgtccaaaagatgccgagaattttatctgtcaactccgtcattgaattttgatggattttcctggaaggacttacggacttatgataagaggttgaggttgtggagttatttggataggtacttgtttcatcgtggggttaataggatagagcgcttttgtatttactgggaactttacactgcggaccaacaacaaagcttacttgaagatgagagatttcgtctggacaaatggatctacaatgccataaggtataatgttgaattccttgacatcaagtatttgggttgggaggcactgccccttcctccttgcgtcttacttagtggatctttgaaatctctgtctgtgcatatgaatggtatgatttttaaagcaccctcactcgcttctttctctaatctggaatgcttgaagttgcaaggtgtttttctagtagatgaggggcttttcaaatggatctcgtgttcatgcaaatgcattaaggaattgtctcttaaatacgtttgtgggagggggacaaagaatgtcactattgaaagcacatctttggaatcattgtgcattgaatgggtttctagtatctgttatcttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

256

Amino Acids

29.68

Weight (kDa)

8.67

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 356
AclWI GGATC 4 cut(s) 117, 416, 511, 641
AcsI RAATTY 3 cut(s) 191, 217, 437
AfaI GTAC 1 cut(s) 293
AfeI AGCGCT 1 cut(s) 326
AgsI TTSAA 8 cut(s) 217, 380, 437, 511, 589, 628, 713, 743
AjnI CCWGG 1 cut(s) 233
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
AluBI AGCT 2 cut(s) 68, 372
AluI AGCT 2 cut(s) 68, 372
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 4 cut(s) 117, 416, 511, 641
Aor13HI TCCGGA 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 191, 217, 437
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 358
AvaII GGWCC 1 cut(s) 358
BauI CACGAG 1 cut(s) 637
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 2 cut(s) 608, 753
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 706
BsmAI GTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 4 cut(s) 109, 408, 503, 633
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 106
BspPI GGATC 4 cut(s) 117, 416, 511, 641
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 109, 408, 503, 633
BssSI CACGAG 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 95, 497
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 4 cut(s) 112, 411, 506, 636
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 4 cut(s) 109, 408, 503, 633
BstMWI GCNNNNNNNGC 2 cut(s) 38, 65
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 3 cut(s) 408, 503, 633
BstYI RGATCY 3 cut(s) 408, 503, 633
BsuRI GGCC 1 cut(s) 54
BtsI GCAGTG 2 cut(s) 351, 470
BtsIMutI CAGTG 2 cut(s) 351, 470
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 478
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 113, 645
CviJI RGCY 6 cut(s) 32, 54, 68, 94, 372, 622
CviKI_1 RGCY 6 cut(s) 32, 54, 68, 94, 372, 622
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 95, 497
DpnI GATC 4 cut(s) 111, 410, 505, 635
DpnII GATC 4 cut(s) 109, 408, 503, 633
DraI TTTAAA 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 358
Eco47III AGCGCT 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 656
FaeI CATG 2 cut(s) 116, 648
FaiI YATR 8 cut(s) 114, 255, 422, 429, 528, 530, 539, 646
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 1 cut(s) 706
FatI CATG 2 cut(s) 112, 644
FauNDI CATATG 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 608, 753
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 478
HhaI GCGC 1 cut(s) 327
Hin1II CATG 2 cut(s) 116, 648
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 1 cut(s) 728
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 107, 398, 578
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 232, 488
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 6 cut(s) 41, 526, 595, 648, 654, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 65
HpyF3I CTNAG 2 cut(s) 95, 497
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 2 cut(s) 116, 648
HspAI GCGC 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 109, 408, 503, 633
LpnPI CCDG 6 cut(s) 120, 220, 247, 325, 383, 563
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 608, 753
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 703
MalI GATC 4 cut(s) 111, 410, 505, 635
MboI GATC 4 cut(s) 109, 408, 503, 633
MboII GAAGA 3 cut(s) 17, 95, 392
MflI RGATCY 3 cut(s) 408, 503, 633
MluCI AATT 4 cut(s) 191, 217, 437, 662
MnlI CCTC 8 cut(s) 70, 255, 261, 460, 492, 565, 610, 681
Mph1103I ATGCAT 1 cut(s) 656
MroI TCCGGA 1 cut(s) 106
MseI TTAA 5 cut(s) 147, 312, 546, 657, 672
MslI CAYNNNNRTG 2 cut(s) 531, 649
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 38, 65
NdeI CATATG 1 cut(s) 528
NdeII GATC 4 cut(s) 109, 408, 503, 633
NlaIII CATG 2 cut(s) 116, 648
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 656
PctI GAATGC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 728
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 3 cut(s) 408, 503, 633
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 531, 649
SaqAI TTAA 5 cut(s) 147, 312, 546, 657, 672
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 109, 408, 503, 633
Sau96I GGNCC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 235
SetI ASST 9 cut(s) 70, 156, 266, 272, 293, 374, 428, 601, 681
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 2 cut(s) 531, 649
Sse9I AATT 4 cut(s) 191, 217, 437, 662
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 608, 753
StyD4I CCNGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 681
TasI AATT 4 cut(s) 191, 217, 437, 662
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 5 cut(s) 147, 312, 546, 657, 672
Tru9I TTAA 5 cut(s) 147, 312, 546, 657, 672
TscAI CASTG 2 cut(s) 358, 477
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 3 cut(s) 290, 545, 633
TspGWI ACGGA 2 cut(s) 198, 262
TspRI CASTG 2 cut(s) 358, 477
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 3 cut(s) 191, 217, 437
XspI CTAG 2 cut(s) 608, 753
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.