RLG00000003343

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000155
Physical Location & Seq
Reverse (-)
47435768 .. 47439026
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003343

Sequence Viewer

Length: 1110 bp
ATGGAGCGCATGAATAAGTCATTGGCAACTGCAAGTTCTCAAGCCGAAGGAGTTTCTGCTGACTACACAGTAGACAGATTGAGCAATGCTCCACCGGAAGTTGCTCATCGTATTCTTGCATTTCTTGATTTTAGGGATCTCATTCGACTGGGAAGTGTGTCCAAAATGTGCAGAGTTTTTTCTCTATCAGCCCCATCATTGGAAGTTTCTTCGTCTGAGGCAGGAAACAGGCGGCAACAACTTAACTTGTTGAATTCTATAGATAGGTACATGATTCATCGAGGGGATGATAAAATTAAGCACTTTCTTGTTGATTGGAGTTTCAGTGCAGGCATTTCTGAAGAGGTTTTGCTCAGGGGAGGTGTAGTGCATGCACCATTGGATGATATTACTTACTTGAGTATGCATATTATGAGCTTGACTGATGACCTAGTCCCTGCAATGGTTTCTCTTCTGAGAGGAATGCCTAATTTGAGTACTTTGTACATAAAATCTTACCCTTCCTTGCACATTGGTAAACCAAAAGCATGTGGATTTAAGAGTAAATACTGGAAATCCCATAAGCTGGATTGTGTTCATCAGCTTCAGGATGTATCTATAGCGCTTTCCACTGGTTATATTAACAATGCCTTGGATTTAGTAAGATATATTCTCGAGAATGCCTCGAATTTGAAACAAATGGTCATATTTTATTTACCCCGCCAATCCTATGTTATAGGGAGGGTAAACAAATTCAAGAAGATTTCTTCTGCCATTGTTGTGTTTAAGGAAAGAGAATTGAATGATGATGGTGTAATGGGTAAGAGTTACCATCGGCTGCTAAAATTCATAAAAATAAGAATCATGGATGCCAAGGCACGCTTAAGCGGAACCAACTTTTCAAATAGTTCAGAAGAACCATCGTCACAGCTAGGTTTAACAGTTACCGACTCAAGAACTGGGGAGCTTAAAAGCAAAAATCTGATGAAATCGATTGTGGAAATTGACAATTCATGTTGTAATCTAACCAAGAGTTCACTTAACCAAGTTGCAGTTGTGGAAATTGACAATTCATGTTGTGATCTAACCAAGCGTTCACTTCTCCCACTTCAGCCTGATCATGTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

370

Amino Acids

41.25

Weight (kDa)

8.93

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 72
AciI CCGC 3 cut(s) 232, 700, 867
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 4 cut(s) 253, 667, 731, 824
AcuI CTGAAG 3 cut(s) 360, 569, 1073
AfaI GTAC 3 cut(s) 269, 478, 485
AfeI AGCGCT 1 cut(s) 603
AfiI CCNNNNNNNGG 3 cut(s) 199, 442, 565
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 5 cut(s) 253, 673, 736, 781, 882
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 5 cut(s) 417, 565, 583, 910, 946
AluI AGCT 5 cut(s) 417, 565, 583, 910, 946
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 603
ApeKI GCWGC 1 cut(s) 817
ApoI RAATTY 4 cut(s) 253, 667, 731, 824
AspLEI GCGC 2 cut(s) 9, 604
AvaI CYCGRG 1 cut(s) 653
BbvI GCAGC 1 cut(s) 804
BccI CCATC 4 cut(s) 202, 782, 819, 907
BclI TGATCA 1 cut(s) 1096
BfaI CTAG 3 cut(s) 431, 911, 1108
BfmI CTRYAG 2 cut(s) 258, 597
BfoI RGCGCY 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 862
BisI GCNGC 2 cut(s) 233, 818
BlsI GCNGC 2 cut(s) 234, 819
BmcAI AGTACT 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 871
BmrI ACTGGG 2 cut(s) 158, 948
BmsI GCATC 1 cut(s) 838
BmuI ACTGGG 2 cut(s) 158, 948
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 647, 679
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 3 cut(s) 24, 418, 916
Bsa29I ATCGAT 1 cut(s) 971
BsaJI CCNNGG 2 cut(s) 630, 852
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 310, 340, 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 442, 565
Bse1I ACTGG 4 cut(s) 153, 554, 616, 943
Bse3DI GCAATG 2 cut(s) 91, 447
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 2 cut(s) 630, 852
BseGI GGATG 4 cut(s) 292, 388, 595, 853
BseLI CCNNNNNNNGG 3 cut(s) 199, 442, 565
BseMI GCAATG 2 cut(s) 91, 447
BseMII CTCAG 3 cut(s) 207, 367, 446
BseNI ACTGG 4 cut(s) 153, 554, 616, 943
BseXI GCAGC 1 cut(s) 804
BsgI GTGCAG 2 cut(s) 190, 348
BshVI ATCGAT 1 cut(s) 971
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 199, 442, 565
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 468, 664
BsoBI CYCGRG 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 3 cut(s) 136, 1060, 1096
BspACI CCGC 3 cut(s) 232, 700, 867
BspCNI CTCAG 3 cut(s) 208, 366, 447
BspDI ATCGAT 1 cut(s) 971
BspLI GGNNCC 1 cut(s) 871
BspPI GGATC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 91, 447
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 4 cut(s) 153, 554, 616, 943
BssECI CCNNGG 2 cut(s) 630, 852
BssMI GATC 3 cut(s) 136, 1060, 1096
BssT1I CCWWGG 2 cut(s) 630, 852
Bst4CI ACNGT 2 cut(s) 70, 922
Bst6I CTCTTC 2 cut(s) 336, 456
BstAFI CTTAAG 1 cut(s) 862
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 331, 372, 859
BstDEI CTNAG 3 cut(s) 216, 353, 455
BstF5I GGATG 4 cut(s) 292, 388, 595, 853
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 2 cut(s) 9, 604
BstKTI GATC 3 cut(s) 139, 1063, 1099
BstMBI GATC 3 cut(s) 136, 1060, 1096
BstNSI RCATGY 2 cut(s) 374, 531
BstSFI CTRYAG 2 cut(s) 258, 597
BstV1I GCAGC 1 cut(s) 804
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 971
BsuTUI ATCGAT 1 cut(s) 971
BtsCI GGATG 4 cut(s) 292, 388, 595, 853
BtsIMutI CAGTG 2 cut(s) 331, 609
Cac8I GCNNGC 3 cut(s) 331, 372, 859
CfoI GCGC 2 cut(s) 9, 604
ClaI ATCGAT 1 cut(s) 971
Csp6I GTAC 3 cut(s) 268, 477, 484
CviAII CATG 8 cut(s) 10, 271, 371, 528, 844, 993, 1053, 1100
CviJI RGCY 9 cut(s) 44, 191, 417, 565, 583, 817, 910, 946, 1093
CviKI_1 RGCY 9 cut(s) 44, 191, 417, 565, 583, 817, 910, 946, 1093
CviQI GTAC 3 cut(s) 268, 477, 484
DdeI CTNAG 3 cut(s) 216, 353, 455
DpnI GATC 3 cut(s) 138, 1062, 1098
DpnII GATC 3 cut(s) 136, 1060, 1096
Eam1104I CTCTTC 2 cut(s) 336, 456
EarI CTCTTC 2 cut(s) 336, 456
Eco130I CCWWGG 2 cut(s) 630, 852
Eco47III AGCGCT 1 cut(s) 603
Eco57I CTGAAG 3 cut(s) 360, 569, 1073
Eco88I CYCGRG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 630, 852
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 630, 852
FaeI CATG 8 cut(s) 13, 274, 374, 531, 847, 996, 1056, 1103
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 1 cut(s) 419
FatI CATG 8 cut(s) 9, 270, 370, 527, 843, 992, 1052, 1099
FauI CCCGC 1 cut(s) 707
FbaI TGATCA 1 cut(s) 1096
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 233, 818
FokI GGATG 4 cut(s) 299, 395, 602, 860
Fsp4HI GCNGC 2 cut(s) 233, 818
FspBI CTAG 3 cut(s) 431, 911, 1108
GlaI GCGC 2 cut(s) 8, 603
GluI GCNGC 2 cut(s) 233, 818
HaeII RGCGCY 1 cut(s) 605
HapII CCGG 1 cut(s) 95
HhaI GCGC 2 cut(s) 9, 604
Hin1II CATG 8 cut(s) 13, 274, 374, 531, 847, 996, 1056, 1103
Hin6I GCGC 2 cut(s) 7, 602
HinP1I GCGC 2 cut(s) 7, 602
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HinfI GANTC 3 cut(s) 274, 840, 929
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 6 cut(s) 73, 518, 727, 1016, 1076, 1105
Hpy188I TCNGA 5 cut(s) 217, 340, 456, 892, 963
Hpy188III TCNNGA 6 cut(s) 125, 587, 653, 655, 736, 933
Hpy8I GTNNAC 6 cut(s) 73, 518, 727, 1016, 1076, 1105
HpyAV CCTTC 2 cut(s) 41, 510
HpyCH4III ACNGT 2 cut(s) 70, 922
HpyF3I CTNAG 3 cut(s) 216, 353, 455
Hsp92II CATG 8 cut(s) 13, 274, 374, 531, 847, 996, 1056, 1103
HspAI GCGC 2 cut(s) 7, 602
Ksp22I TGATCA 1 cut(s) 1096
Kzo9I GATC 3 cut(s) 136, 1060, 1096
LmnI GCTCC 3 cut(s) 4, 94, 943
Lsp1109I GCAGC 1 cut(s) 804
LweI GCATC 1 cut(s) 838
MaeI CTAG 3 cut(s) 431, 911, 1108
MaeIII GTNAC 3 cut(s) 806, 903, 922
MalI GATC 3 cut(s) 138, 1062, 1098
MboI GATC 3 cut(s) 136, 1060, 1096
MboII GAAGA 6 cut(s) 201, 353, 443, 738, 751, 905
MflI RGATCY 1 cut(s) 136
MlyI GAGTC 1 cut(s) 923
MnlI CCTC 7 cut(s) 211, 275, 337, 353, 452, 673, 714
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 9 cut(s) 243, 297, 537, 621, 765, 863, 917, 948, 1020
MslI CAYNNNNRTG 1 cut(s) 758
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 1 cut(s) 95
Mva1269I GAATGC 2 cut(s) 468, 664
NdeII GATC 3 cut(s) 136, 1060, 1096
NlaIII CATG 8 cut(s) 13, 274, 374, 531, 847, 996, 1056, 1103
NlaIV GGNNCC 1 cut(s) 871
NmuCI GTSAC 1 cut(s) 903
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 2 cut(s) 374, 531
PaeI GCATGC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 653
PctI GAATGC 2 cut(s) 468, 664
PfeI GAWTC 2 cut(s) 274, 840
PflFI GACNNNGTC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 2 cut(s) 234, 819
PleI GAGTC 1 cut(s) 923
PpsI GAGTC 1 cut(s) 923
PspN4I GGNNCC 1 cut(s) 871
PsuI RGATCY 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 431
RsaI GTAC 3 cut(s) 269, 478, 485
RsaNI GTAC 3 cut(s) 268, 477, 484
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 9 cut(s) 243, 297, 537, 621, 765, 863, 917, 948, 1020
SatI GCNGC 2 cut(s) 233, 818
Sau3AI GATC 3 cut(s) 136, 1060, 1096
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 923
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 2 cut(s) 258, 597
Sfr274I CTCGAG 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 5 cut(s) 39, 397, 653, 862, 931
SmoI CTYRAG 5 cut(s) 39, 397, 653, 862, 931
SphI GCATGC 1 cut(s) 374
SsiI CCGC 3 cut(s) 232, 700, 867
SspMI CTAG 3 cut(s) 431, 911, 1108
StyI CCWWGG 2 cut(s) 630, 852
TaaI ACNGT 2 cut(s) 70, 922
TaqI TCGA 5 cut(s) 145, 280, 654, 665, 971
TatI WGTACW 2 cut(s) 476, 483
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 2 cut(s) 274, 840
Tru1I TTAA 9 cut(s) 243, 297, 537, 621, 765, 863, 917, 948, 1020
Tru9I TTAA 9 cut(s) 243, 297, 537, 621, 765, 863, 917, 948, 1020
TscAI CASTG 2 cut(s) 331, 616
TseFI GTSAC 1 cut(s) 903
TseI GCWGC 1 cut(s) 817
Tsp45I GTSAC 1 cut(s) 903
TspDTI ATGAA 7 cut(s) 26, 266, 566, 817, 980, 981, 1041
TspRI CASTG 2 cut(s) 331, 616
Tth111I GACNNNGTC 1 cut(s) 431
Van91I CCANNNNNTGG 1 cut(s) 565
Vha464I CTTAAG 1 cut(s) 862
XapI RAATTY 4 cut(s) 253, 667, 731, 824
XceI RCATGY 2 cut(s) 374, 531
XhoI CTCGAG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 3 cut(s) 431, 911, 1108
ZrmI AGTACT 1 cut(s) 478
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.