Rh7AG225600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000155
Physical Location & Seq
Forward (+)
21157011 .. 21164306
7296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG225600.1

Sequence Viewer

Length: 1236 bp
ATGGTCGTAGGCGGTAGGCTTAATAGTGGATATATCTTGTATTTAGTATTTACATTAGTTTGTTCGCATGTCATCAATACTTGTAGCCTTGTAGGTGTAATTTTCTCTAACAAAAACAAAGCAAAACCAAGCATCTTGGAACACAAGCATAAGTCACTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTGTGCTGACCCCATGGTAGACAGATTGAGTAGTGTTCCATGCGAAGTTGCTCACCAAATTCTTTCATCGGTCAGTTTTAAAGATCTCACTCGCGTGGGCAGCATGTCCAAAAGATGCACAGAGTTTTATCTATCAACTCCATCATTGACTTTTTCTTCCTTGTATGGAAACAGACAGCAGCAATTGCACTTGTTGAATTGTATAGATAGGTATATGATTCGTCGCAGGGATGATAAGATAAAGAGCTTTCGTATTCATTGGCGTTTCTCTGCAGGAATTTCAGAAGAGAGTTTCCGAATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGTTTGAATACAAAAGATGGAGTAACACTTGAATTGCCACCTTGCATCTATTGCTGTGAATCTTTGAGGTCAATGTTGATCAACACAGAGACAATTCTTAAAGCACCCTCCTTTGCTTGTTCCATTAATCTCCGGTACTTGAAATTGACTAGTGTTAGAATGGATGATGGGTTTGGCAAATGGATCTCGTGCTCTTGCAAATGCATCAAGGAACTATTGTTAGACAATGTTCATGTCGGAAGTTTTACCATTGAAAGCTCGTCTTTGGAATCATTTACATTGTTGTATACCTATAATAGTGACCCCTGCCATTTTTGCATCTCAGGTGAGAAACTTGCCGAGATAAGTATAGAGTGGGAAAATAGTCAAGCTAGCAGCAGTATTACCAAATCATTAAATGTTTATGCCCCAAATCTGAAGTATTTGAAATGGATTGGGAATTTGTTGAATTACCAAAATTTGGGGAAATTTATGTGTTTAGAAAAAGCTCATATCTTTCTCAAGCGTCAGGGAGATGGTGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAATTCACTTGTTCTGACCGGGGAGACCGTTAAGGTAAAGAGACAGCTTTCTTTTTATCACCACCCCCCTCCTCTCCTCTCCTCTCTCCCTTTCTCTCCCTTCCTTTTTAAATACAGAAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

411

Amino Acids

46.61

Weight (kDa)

8.84

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccI GTMKAC 2 cut(s) 207, 833
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 12
AclWI GGATC 3 cut(s) 493, 506, 737
AcsI RAATTY 5 cut(s) 246, 465, 985, 1003, 1013
AcuI CTGAAG 1 cut(s) 983
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 1006
AgsI TTSAA 8 cut(s) 385, 527, 553, 578, 688, 800, 973, 994
AhlI ACTAGT 1 cut(s) 695
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 7 cut(s) 179, 188, 435, 804, 917, 1034, 1156
AluI AGCT 7 cut(s) 179, 188, 435, 804, 917, 1034, 1156
Alw21I GWGCWC 1 cut(s) 740
Alw26I GTCTC 3 cut(s) 629, 1127, 1144
AlwI GGATC 3 cut(s) 493, 506, 737
ApeKI GCWGC 3 cut(s) 288, 367, 921
ApoI RAATTY 5 cut(s) 246, 465, 985, 1003, 1013
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
AseI ATTAAT 1 cut(s) 672
AsuC2I CCSGG 1 cut(s) 1129
AsuHPI GGTGA 4 cut(s) 233, 884, 1076, 1160
AsuNHI GCTAGC 1 cut(s) 917
BamHI GGATCC 1 cut(s) 498
BauI CACGAG 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 740
BbvI GCAGC 3 cut(s) 300, 379, 933
BccI CCATC 4 cut(s) 337, 557, 707, 1055
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 1129
BcoDI GTCTC 3 cut(s) 629, 1127, 1144
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 2 cut(s) 696, 918
BfmI CTRYAG 2 cut(s) 459, 1102
BglII AGATCT 1 cut(s) 271
BisI GCNGC 3 cut(s) 289, 368, 922
BlsI GCNGC 3 cut(s) 290, 369, 923
Bme1390I CCNGG 1 cut(s) 1129
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 1129
BmsI GCATC 5 cut(s) 141, 293, 600, 759, 873
BmtI GCTAGC 1 cut(s) 921
BpuEI CTTGAG 4 cut(s) 159, 165, 560, 1031
BpuMI CCSGG 1 cut(s) 1129
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 201, 1128
BsaWI WCCGGW 1 cut(s) 678
Bsc4I CCNNNNNNNGG 1 cut(s) 1006
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 526
BseDI CCNNGG 2 cut(s) 201, 1128
BseGI GGATG 2 cut(s) 424, 715
BseLI CCNNNNNNNGG 1 cut(s) 1006
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 3 cut(s) 1170, 1175, 1180
BseXI GCAGC 3 cut(s) 300, 379, 933
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 2 cut(s) 679, 1128
BslI CCNNNNNNNGG 1 cut(s) 1006
BsmAI GTCTC 3 cut(s) 629, 1127, 1144
Bso31I GGTCTC 1 cut(s) 1127
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 5 cut(s) 271, 498, 535, 624, 729
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 881
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 500
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 921
BspPI GGATC 3 cut(s) 493, 506, 737
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 201, 1128
BssMI GATC 5 cut(s) 271, 498, 535, 624, 729
BssNAI GTATAC 1 cut(s) 834
BssSI CACGAG 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 733
Bst4CI ACNGT 1 cut(s) 1138
Bst6I CTCTTC 1 cut(s) 468
BstAPI GCANNNNNTGC 2 cut(s) 373, 597
BstC8I GCNNGC 1 cut(s) 919
BstDEI CTNAG 1 cut(s) 868
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 424, 715
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 5 cut(s) 274, 501, 538, 627, 732
BstMAI GTCTC 3 cut(s) 629, 1127, 1144
BstMBI GATC 5 cut(s) 271, 498, 535, 624, 729
BstMWI GCNNNNNNNGC 5 cut(s) 185, 288, 373, 597, 861
BstNSI RCATGY 2 cut(s) 71, 295
BstSCI CCNGG 1 cut(s) 1127
BstSFI CTRYAG 2 cut(s) 459, 1102
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 300, 379, 933
BstX2I RGATCY 3 cut(s) 271, 498, 729
BstYI RGATCY 3 cut(s) 271, 498, 729
BstZ17I GTATAC 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 424, 715
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 155, 516
Cac8I GCNNGC 1 cut(s) 919
CseI GACGC 1 cut(s) 1040
Csp6I GTAC 1 cut(s) 682
CviAII CATG 5 cut(s) 68, 202, 228, 292, 779
CviJI RGCY 9 cut(s) 19, 87, 179, 188, 435, 804, 917, 1034, 1156
CviKI_1 RGCY 9 cut(s) 19, 87, 179, 188, 435, 804, 917, 1034, 1156
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 868
DpnI GATC 5 cut(s) 273, 500, 537, 626, 731
DpnII GATC 5 cut(s) 271, 498, 535, 624, 729
DraI TTTAAA 2 cut(s) 268, 1219
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 1127
Eco57I CTGAAG 1 cut(s) 983
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 2 cut(s) 752, 1081
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 71, 205, 231, 295, 782
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FatI CATG 5 cut(s) 67, 201, 227, 291, 778
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 2 cut(s) 207, 833
Fnu4HI GCNGC 3 cut(s) 289, 368, 922
FokI GGATG 2 cut(s) 431, 722
Fsp4HI GCNGC 3 cut(s) 289, 368, 922
FspBI CTAG 2 cut(s) 696, 918
GluI GCNGC 3 cut(s) 289, 368, 922
HapII CCGG 2 cut(s) 679, 1128
HgaI GACGC 1 cut(s) 1040
Hin1II CATG 5 cut(s) 71, 205, 231, 295, 782
HinfI GANTC 3 cut(s) 406, 605, 815
HpaII CCGG 2 cut(s) 679, 1128
HphI GGTGA 4 cut(s) 233, 884, 1076, 1160
Hpy166II GTNNAC 2 cut(s) 208, 834
Hpy188I TCNGA 5 cut(s) 472, 485, 785, 963, 1125
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 2 cut(s) 208, 834
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 1 cut(s) 1219
HpyCH4III ACNGT 1 cut(s) 1138
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 288, 373, 597, 861
HpyF3I CTNAG 1 cut(s) 868
Hsp92II CATG 5 cut(s) 71, 205, 231, 295, 782
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 5 cut(s) 271, 498, 535, 624, 729
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 9 cut(s) 143, 400, 447, 692, 855, 865, 1040, 1090, 1141
Lsp1109I GCAGC 3 cut(s) 300, 379, 933
LweI GCATC 5 cut(s) 141, 293, 600, 759, 873
MaeI CTAG 2 cut(s) 696, 918
MaeIII GTNAC 4 cut(s) 153, 568, 845, 1064
MalI GATC 5 cut(s) 273, 500, 537, 626, 731
MboI GATC 5 cut(s) 271, 498, 535, 624, 729
MboII GAAGA 2 cut(s) 336, 485
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 3 cut(s) 271, 498, 729
MhlI GDGCHC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 763
MnlI CCTC 8 cut(s) 507, 606, 664, 1078, 1188, 1191, 1196, 1201
Mph1103I ATGCAT 2 cut(s) 752, 1081
MseI TTAA 8 cut(s) 21, 267, 645, 672, 941, 1110, 1140, 1218
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 2 cut(s) 679, 1128
MspR9I CCNGG 1 cut(s) 1129
MunI CAATTG 1 cut(s) 371
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 5 cut(s) 185, 288, 373, 597, 861
NciI CCSGG 1 cut(s) 1129
NcoI CCATGG 1 cut(s) 201
NdeII GATC 5 cut(s) 271, 498, 535, 624, 729
NheI GCTAGC 1 cut(s) 917
NlaIII CATG 5 cut(s) 71, 205, 231, 295, 782
NlaIV GGNNCC 1 cut(s) 500
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 3 cut(s) 153, 845, 1064
NsiI ATGCAT 2 cut(s) 752, 1081
NspI RCATGY 2 cut(s) 71, 295
OliI CACNNNNGTG 1 cut(s) 281
PfeI GAWTC 3 cut(s) 406, 605, 815
PflMI CCANNNNNTGG 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 290, 369, 923
PshBI ATTAAT 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 3 cut(s) 271, 498, 729
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 8 cut(s) 21, 267, 645, 672, 941, 1110, 1140, 1218
SatI GCNGC 3 cut(s) 289, 368, 922
Sau3AI GATC 5 cut(s) 271, 498, 535, 624, 729
ScrFI CCNGG 1 cut(s) 1129
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 5 cut(s) 141, 293, 600, 759, 873
SfcI CTRYAG 2 cut(s) 459, 1102
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 4 cut(s) 174, 180, 539, 1046
SmoI CTYRAG 4 cut(s) 174, 180, 539, 1046
SpeI ACTAGT 1 cut(s) 695
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 696, 918
StyD4I CCNGG 1 cut(s) 1127
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 1138
TaqII GACCGA 1 cut(s) 247
TfiI GAWTC 3 cut(s) 406, 605, 815
Tru1I TTAA 8 cut(s) 21, 267, 645, 672, 941, 1110, 1140, 1218
Tru9I TTAA 8 cut(s) 21, 267, 645, 672, 941, 1110, 1140, 1218
TscAI CASTG 2 cut(s) 162, 516
TseFI GTSAC 3 cut(s) 153, 845, 1064
TseI GCWGC 3 cut(s) 288, 367, 921
Tsp45I GTSAC 3 cut(s) 153, 845, 1064
TspDTI ATGAA 3 cut(s) 243, 434, 767
TspRI CASTG 2 cut(s) 162, 516
Van91I CCANNNNNTGG 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 5 cut(s) 246, 465, 985, 1003, 1013
XceI RCATGY 2 cut(s) 71, 295
XmiI GTMKAC 2 cut(s) 207, 833
XspI CTAG 2 cut(s) 696, 918
Zsp2I ATGCAT 2 cut(s) 752, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.