Rh3AG188600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000155
Physical Location & Seq
Forward (+)
18105576 .. 18106658
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG188600.1

Sequence Viewer

Length: 1083 bp
ATGGAACAGAGGCCTAGGTTGAGGGGAGTTGGAGCTCCTACCAAGTGTAGGATAGACAGATTTACAAGCCTTCCGGACCATCTTGTTCATCACATACTTTCCTTTGTTGCTATCACTGACCTTACTCGTTTCGGTTGCGCCTCTAAAAAGTGCAGAGAGCTTTATCTGTCAACTCCTTCGTTGAATTTGAACGGATTTTCTCATGCCAATTTGTTAAATGATGATAAGCGATTAGAGTTGTTGAGTTCTTTGGATAGGTTCTTATTAGTTCATCGAGGGGTTAATAAGCTGAAACGTTTGTGTATCTTTTTGAATGCTTACCAAGGCAGTAAGAATGAGGCATTTCGAATAATCACATGGATCCACAGTGCTGTAAGGTGTAATGTTGAAGTCCTTGAGCTTGATATTGGTGTACCCAATGAGACACTGCCCTTTCCGTTGTCTGTCTTCCATTGTGGATCTCTGAGGTCTCTATTGGTTAAGATGAGCTGTCAGATTCTTAAAGCACCCTCACTCACATCTTTCTCTAATCTTGAATACTTGAAGTTGACATATGTTATAATAGGAGATGAGGGGATTTTCAAATGGATCTCTTGTTGCTGCAAATGCATTGAGACATTAATTCTTGAACATGCTTATGGGAGTAAAACTGTCACCATTCAAAGCTCTTCTTTAAAATCATTTCACTTTGTGACCGATTATCTGGTTCGTCCCTGCAATCTCAACATCTCTGGTGGAAGACTTGAAGACATATTTATTGACTGGGGATTTAATTCCGATTTCAGCAGATCATTAAATATTTCTGCTCCAGATCTTAAATATTTGAAATGGTCAGGGAATTTGTTGACTCAACAAAATCTGGGGAAAATGACCTGTTTACAGAAAGCTGAGCTCTTTCTGAAACCTGAAGCAGATGACTTTAACATGTTTGAGATTCTTTGCAGCATAAACAGGGTTGAAGTTCTTATTCTAAACAAAGAGACCATCATGGTAACAAGACACTACTCTTCAAGCTCTGGTTTTTCTATACTGTTCTTTACGGGTTTTCTGGTTCCCTACCTTATTTGGGGATTGTTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

360

Amino Acids

40.96

Weight (kDa)

8.7

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 119 - 287 7.5e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccIII TCCGGA 1 cut(s) 73
AclI AACGTT 1 cut(s) 295
AclWI GGATC 4 cut(s) 355, 368, 466, 596
AcsI RAATTY 2 cut(s) 184, 838
AcuI CTGAAG 1 cut(s) 927
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 48, 1066
AflIII ACRYGT 1 cut(s) 924
AluBI AGCT 9 cut(s) 35, 160, 289, 400, 489, 666, 887, 892, 1014
AluI AGCT 9 cut(s) 35, 160, 289, 400, 489, 666, 887, 892, 1014
Alw21I GWGCWC 2 cut(s) 37, 894
Alw26I GTCTC 4 cut(s) 416, 474, 608, 974
AlwI GGATC 4 cut(s) 355, 368, 466, 596
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 600, 942
ApoI RAATTY 2 cut(s) 184, 838
AseI ATTAAT 1 cut(s) 620
AspA2I CCTAGG 1 cut(s) 14
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 646
AsuII TTCGAA 1 cut(s) 346
AvaII GGWCC 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 37, 894
BbsI GAAGAC 3 cut(s) 439, 745, 753
Bbv12I GWGCWC 2 cut(s) 37, 894
BbvI GCAGC 2 cut(s) 587, 954
BccI CCATC 2 cut(s) 87, 992
BcoDI GTCTC 4 cut(s) 416, 474, 608, 974
BfaI CTAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 811
BisI GCNGC 2 cut(s) 601, 943
BlnI CCTAGG 1 cut(s) 14
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 2 cut(s) 602, 944
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 362, 1053
BmrI ACTGGG 1 cut(s) 772
BmuI ACTGGG 1 cut(s) 772
BpiI GAAGAC 3 cut(s) 439, 745, 753
BpmI CTGGAG 1 cut(s) 792
Bpu1102I GCTNAGC 1 cut(s) 888
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 416
BsaI GGTCTC 2 cut(s) 474, 974
BsaJI CCNNGG 2 cut(s) 14, 322
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 1066
Bse1I ACTGG 1 cut(s) 767
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 14, 322
BseLI CCNNNNNNNGG 2 cut(s) 48, 1066
BseMII CTCAG 2 cut(s) 455, 879
BseNI ACTGG 1 cut(s) 767
BseXI GCAGC 2 cut(s) 587, 954
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 37, 894
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 2 cut(s) 48, 1066
BsmAI GTCTC 4 cut(s) 416, 474, 608, 974
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 13
Bso31I GGTCTC 2 cut(s) 474, 974
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 37, 894
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 5 cut(s) 360, 458, 588, 788, 811
Bsp1720I GCTNAGC 1 cut(s) 888
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 456, 880
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 362, 1053
BspPI GGATC 4 cut(s) 355, 368, 466, 596
BspQI GCTCTTC 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 346
BspTNI GGTCTC 2 cut(s) 474, 974
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 14, 322
BssMI GATC 5 cut(s) 360, 458, 588, 788, 811
BssT1I CCWWGG 2 cut(s) 14, 322
Bst4CI ACNGT 3 cut(s) 368, 652, 1032
Bst6I CTCTTC 2 cut(s) 673, 1012
BstBI TTCGAA 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 464, 888
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 5 cut(s) 363, 461, 591, 791, 814
BstMAI GTCTC 4 cut(s) 416, 474, 608, 974
BstMBI GATC 5 cut(s) 360, 458, 588, 788, 811
BstMWI GCNNNNNNNGC 1 cut(s) 606
BstNSI RCATGY 2 cut(s) 635, 928
BstV1I GCAGC 2 cut(s) 587, 954
BstV2I GAAGAC 3 cut(s) 439, 745, 753
BstX2I RGATCY 4 cut(s) 360, 458, 588, 811
BstYI RGATCY 4 cut(s) 360, 458, 588, 811
BsuRI GGCC 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 3 cut(s) 114, 373, 425
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 413
CviAII CATG 5 cut(s) 203, 357, 632, 925, 988
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 2 cut(s) 464, 888
DpnI GATC 5 cut(s) 362, 460, 590, 790, 813
DpnII GATC 5 cut(s) 360, 458, 588, 788, 811
DraI TTTAAA 1 cut(s) 675
DraIII CACNNNGTG 1 cut(s) 691
Eam1104I CTCTTC 2 cut(s) 673, 1012
EarI CTCTTC 2 cut(s) 673, 1012
Ecl136II GAGCTC 2 cut(s) 35, 892
Eco130I CCWWGG 2 cut(s) 14, 322
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 37, 894
Eco31I GGTCTC 2 cut(s) 474, 974
Eco47I GGWCC 1 cut(s) 76
Eco53kI GAGCTC 2 cut(s) 35, 892
Eco57I CTGAAG 1 cut(s) 927
EcoICRI GAGCTC 2 cut(s) 35, 892
EcoT14I CCWWGG 2 cut(s) 14, 322
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 2 cut(s) 37, 894
ErhI CCWWGG 2 cut(s) 14, 322
FaeI CATG 5 cut(s) 206, 360, 635, 928, 991
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 202, 356, 631, 924, 987
FauNDI CATATG 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 601, 943
FriOI GRGCYC 2 cut(s) 37, 894
Fsp4HI GCNGC 2 cut(s) 601, 943
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 601, 943
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 140
Hin1II CATG 5 cut(s) 206, 360, 635, 928, 991
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 3 cut(s) 171, 549, 846
HindII GTYRAC 3 cut(s) 171, 549, 846
HinfI GANTC 3 cut(s) 496, 847, 934
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 5 cut(s) 171, 413, 549, 846, 878
Hpy188I TCNGA 4 cut(s) 465, 495, 778, 900
Hpy188III TCNNGA 4 cut(s) 74, 533, 626, 809
Hpy8I GTNNAC 5 cut(s) 171, 413, 549, 846, 878
HpyAV CCTTC 2 cut(s) 80, 186
HpyCH4III ACNGT 3 cut(s) 368, 652, 1032
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 5 cut(s) 153, 603, 609, 717, 942
HpyF10VI GCNNNNNNNGC 1 cut(s) 606
HpyF3I CTNAG 2 cut(s) 464, 888
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 5 cut(s) 206, 360, 635, 928, 991
HspAI GCGC 1 cut(s) 138
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 360, 458, 588, 788, 811
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 3 cut(s) 32, 40, 811
Lsp1109I GCAGC 2 cut(s) 587, 954
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 652, 691, 991
MalI GATC 5 cut(s) 362, 460, 590, 790, 813
MboI GATC 5 cut(s) 360, 458, 588, 788, 811
MboII GAAGA 5 cut(s) 439, 660, 750, 758, 999
MflI RGATCY 4 cut(s) 360, 458, 588, 811
MhlI GDGCHC 2 cut(s) 37, 894
MluCI AATT 5 cut(s) 184, 208, 621, 772, 838
MlyI GAGTC 1 cut(s) 841
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 8 cut(s) 3, 15, 151, 269, 331, 459, 520, 565
Mph1103I ATGCAT 1 cut(s) 611
MroI TCCGGA 1 cut(s) 73
MslI CAYNNNNRTG 1 cut(s) 636
MspI CCGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 606
NdeI CATATG 1 cut(s) 553
NdeII GATC 5 cut(s) 360, 458, 588, 788, 811
NlaIII CATG 5 cut(s) 206, 360, 635, 928, 991
NlaIV GGNNCC 2 cut(s) 362, 1053
NmuCI GTSAC 2 cut(s) 652, 691
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 2 cut(s) 635, 928
NspV TTCGAA 1 cut(s) 346
PceI AGGCCT 1 cut(s) 13
PciI ACATGT 1 cut(s) 924
PciSI GCTCTTC 1 cut(s) 673
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 496, 934
PkrI GCNGC 2 cut(s) 602, 944
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
PscI ACATGT 1 cut(s) 924
PshBI ATTAAT 1 cut(s) 620
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 2 cut(s) 37, 894
Psp1406I AACGTT 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 362, 1053
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 4 cut(s) 360, 458, 588, 811
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 2 cut(s) 37, 894
SapI GCTCTTC 1 cut(s) 673
SatI GCNGC 2 cut(s) 601, 943
Sau3AI GATC 5 cut(s) 360, 458, 588, 788, 811
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 841
SduI GDGCHC 2 cut(s) 37, 894
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 5 cut(s) 184, 208, 621, 772, 838
SseBI AGGCCT 1 cut(s) 13
SspI AATATT 2 cut(s) 799, 821
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 2 cut(s) 37, 894
StuI AGGCCT 1 cut(s) 13
StyI CCWWGG 2 cut(s) 14, 322
TaaI ACNGT 3 cut(s) 368, 652, 1032
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 274, 346
TaqII GACCGA 1 cut(s) 710
TasI AATT 5 cut(s) 184, 208, 621, 772, 838
TfiI GAWTC 2 cut(s) 496, 934
TscAI CASTG 3 cut(s) 121, 373, 432
TseFI GTSAC 2 cut(s) 652, 691
TseI GCWGC 2 cut(s) 600, 942
Tsp45I GTSAC 2 cut(s) 652, 691
TspDTI ATGAA 2 cut(s) 77, 260
TspGWI ACGGA 2 cut(s) 207, 426
TspRI CASTG 3 cut(s) 121, 373, 432
VpaK11BI GGWCC 1 cut(s) 76
VspI ATTAAT 1 cut(s) 620
XapI RAATTY 2 cut(s) 184, 838
XceI RCATGY 2 cut(s) 635, 928
XmaJI CCTAGG 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.