Rh3AG198500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000155
Physical Location & Seq
Forward (+)
19442450 .. 19444045
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG198500.1

Sequence Viewer

Length: 954 bp
ATGGAGTATAAGTATGTATCCCTAACATTACCCTCCTCGGCTTGTTTCTCTAATATTGAATACTTGAAGTTGAAAAACATTGAGGTAGTGGATGAGGGGTTTTTCAAATGGATCTCGTCTACTTGCAAATCTATTAAGAAATTACAACTTGAAGAAATTCAGGGGATAAAACATCTCAGCATTGAAAGTTCATCTTTGCAATCGTTTAGTTTTGTGCATCGCCTACAGTTGGACCCCTTCCATCTTAGCATTTCTGCTGACAATCTGGAAGATCTAGTTATTAATTGGGGATTTTGTGGTTGCCAAAAGTTAAATATATTTGCTCCGGAAGTTAGATATATGAAATGGACAGGGATATTGTTGATTCACCAAAATTTTGGTGAATTTAAGCTTCTAGAACAAGCTGAGCTTTATCTGAGACCTGGAGGGAATGACTTTCTATCTGAGTTTCTTAGCAGCATATGCAAGGTCAAGGCTCTTATTATGAAGGAAGATACCGTAAATATCGTAAATGCTTTGTCCGAGAAAGGTTCCATGCCAGCACCTTTAGATAATGTTCGTCAACTGCAGCTTCATGTTGGGTACTTCTGTGATCACCTAGTCCCGTCATCCGGATATAATGAGGCATATTGGAAATTGCTAAACCTTTCTTTTGTTAATAAACTTGAGGAGGTAAGCATAGAGCTTCCTAATGGGTCTAATGGAGTCGAGTTAGCATGGTATATACTAGATTATGCCCAGAGTTTGAAGAAAATGGTGATTGTTCATTCACCCGAGCAATCTCATTTCAAAAGGAAGTTGCTAAAAAGAAAAAAGATTTCGAATGTCAGAGTTGTCTTTCAGGAAGATCAAAGACGAGGATTGCAGAGCAAATTAGAAGAAGAATATTGTCAAATAAAGGATAACTATGATTTTCCGACTCCGGAGATGTTACTGGAGAAAGTCCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

317

Amino Acids

36.64

Weight (kDa)

6.47

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AccIII TCCGGA 3 cut(s) 325, 611, 922
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 3 cut(s) 156, 373, 383
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 2 cut(s) 229, 611
AgsI TTSAA 8 cut(s) 59, 67, 73, 106, 152, 185, 748, 790
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 5 cut(s) 391, 404, 409, 571, 685
AluI AGCT 5 cut(s) 391, 404, 409, 571, 685
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 773
Aor13HI TCCGGA 3 cut(s) 325, 611, 922
ApeKI GCWGC 2 cut(s) 456, 568
ApoI RAATTY 3 cut(s) 156, 373, 383
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 5 cut(s) 359, 392, 587, 762, 769
AsuII TTCGAA 1 cut(s) 821
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 574, 607
BbvI GCAGC 2 cut(s) 468, 580
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 4 cut(s) 275, 395, 599, 728
BfmI CTRYAG 2 cut(s) 224, 566
BfuI GTATCC 1 cut(s) 28
BglII AGATCT 1 cut(s) 271
BisI GCNGC 2 cut(s) 457, 569
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 2 cut(s) 458, 570
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 234, 532
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 686
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 3 cut(s) 325, 611, 922
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 611
Bse1I ACTGG 1 cut(s) 939
BseAI TCCGGA 3 cut(s) 325, 611, 922
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 97, 608
BseLI CCNNNNNNNGG 2 cut(s) 229, 611
BseMII CTCAG 4 cut(s) 190, 396, 407, 435
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 2 cut(s) 25, 683
BseXI GCAGC 2 cut(s) 468, 580
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 3 cut(s) 326, 612, 923
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 2 cut(s) 229, 611
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 773
Bsp119I TTCGAA 1 cut(s) 821
Bsp13I TCCGGA 3 cut(s) 325, 611, 922
Bsp143I GATC 4 cut(s) 111, 271, 592, 847
Bsp1720I GCTNAGC 1 cut(s) 405
BspCNI CTCAG 4 cut(s) 189, 397, 408, 436
BspEI TCCGGA 3 cut(s) 325, 611, 922
BspLI GGNNCC 2 cut(s) 234, 532
BspMAI CTGCAG 1 cut(s) 570
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 939
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 111, 271, 592, 847
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 228, 499
BstAPI GCANNNNNTGC 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 6 cut(s) 176, 245, 405, 416, 444, 452
BstF5I GGATG 2 cut(s) 97, 608
BstKTI GATC 4 cut(s) 114, 274, 595, 850
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 4 cut(s) 111, 271, 592, 847
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 2 cut(s) 224, 566
BstV1I GCAGC 2 cut(s) 468, 580
BstX2I RGATCY 2 cut(s) 111, 271
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 2 cut(s) 111, 271
BsuI GTATCC 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 97, 608
Cac8I GCNNGC 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 583
CviAII CATG 3 cut(s) 535, 575, 717
CviJI RGCY 7 cut(s) 41, 391, 404, 409, 476, 571, 685
CviKI_1 RGCY 7 cut(s) 41, 391, 404, 409, 476, 571, 685
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 6 cut(s) 176, 245, 405, 416, 444, 452
DpnI GATC 4 cut(s) 113, 273, 594, 849
DpnII GATC 4 cut(s) 111, 271, 592, 847
Eco31I GGTCTC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 421
FaeI CATG 3 cut(s) 538, 578, 720
FalI AAGNNNNNCTT 4 cut(s) 178, 210, 393, 425
FaqI GGGAC 1 cut(s) 587
FatI CATG 3 cut(s) 534, 574, 716
FauNDI CATATG 1 cut(s) 461
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 457, 569
FokI GGATG 2 cut(s) 104, 595
Fsp4HI GCNGC 2 cut(s) 457, 569
FspBI CTAG 4 cut(s) 275, 395, 599, 728
GluI GCNGC 2 cut(s) 457, 569
GsuI CTGGAG 1 cut(s) 444
HapII CCGG 3 cut(s) 326, 612, 923
Hin1II CATG 3 cut(s) 538, 578, 720
HincII GTYRAC 1 cut(s) 563
HindII GTYRAC 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 364, 705, 919
HpaII CCGG 3 cut(s) 326, 612, 923
HphI GGTGA 5 cut(s) 359, 392, 587, 762, 769
Hpy166II GTNNAC 2 cut(s) 120, 563
Hpy188I TCNGA 5 cut(s) 417, 445, 523, 830, 918
Hpy188III TCNNGA 7 cut(s) 266, 326, 395, 612, 842, 923, 946
Hpy8I GTNNAC 2 cut(s) 120, 563
HpyAV CCTTC 2 cut(s) 247, 481
HpyCH4III ACNGT 2 cut(s) 228, 499
HpyCH4V TGCA 6 cut(s) 126, 199, 217, 465, 568, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpyF3I CTNAG 6 cut(s) 176, 245, 405, 416, 444, 452
Hsp92II CATG 3 cut(s) 538, 578, 720
Kpn2I TCCGGA 3 cut(s) 325, 611, 922
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 111, 271, 592, 847
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 468, 580
LweI GCATC 1 cut(s) 226
MaeI CTAG 4 cut(s) 275, 395, 599, 728
MaeIII GTNAC 1 cut(s) 930
MalI GATC 4 cut(s) 113, 273, 594, 849
MboI GATC 4 cut(s) 111, 271, 592, 847
MboII GAAGA 7 cut(s) 164, 281, 503, 760, 857, 890, 893
MflI RGATCY 2 cut(s) 111, 271
MluCI AATT 7 cut(s) 140, 156, 283, 373, 383, 635, 872
MlyI GAGTC 2 cut(s) 714, 913
MmeI TCCRAC 2 cut(s) 210, 941
MnlI CCTC 9 cut(s) 43, 46, 76, 88, 419, 616, 661, 664, 851
MroI TCCGGA 3 cut(s) 325, 611, 922
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 5 cut(s) 135, 282, 311, 387, 657
MspI CCGG 3 cut(s) 326, 612, 923
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 462
NdeI CATATG 1 cut(s) 461
NdeII GATC 4 cut(s) 111, 271, 592, 847
NlaIII CATG 3 cut(s) 538, 578, 720
NlaIV GGNNCC 2 cut(s) 234, 532
NmeAIII GCCGAG 1 cut(s) 17
NspV TTCGAA 1 cut(s) 821
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 458, 570
PleI GAGTC 2 cut(s) 713, 913
PpsI GAGTC 2 cut(s) 713, 913
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 234, 532
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 570
PsuI RGATCY 2 cut(s) 111, 271
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SaqAI TTAA 5 cut(s) 135, 282, 311, 387, 657
SatI GCNGC 2 cut(s) 457, 569
Sau3AI GATC 4 cut(s) 111, 271, 592, 847
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 714, 913
ScrFI CCNGG 1 cut(s) 423
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 224, 566
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 7 cut(s) 140, 156, 283, 373, 383, 635, 872
SspI AATATT 2 cut(s) 55, 887
SspMI CTAG 4 cut(s) 275, 395, 599, 728
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 228, 499
TaqI TCGA 2 cut(s) 708, 821
TasI AATT 7 cut(s) 140, 156, 283, 373, 383, 635, 872
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 5 cut(s) 135, 282, 311, 387, 657
Tru9I TTAA 5 cut(s) 135, 282, 311, 387, 657
TseI GCWGC 2 cut(s) 456, 568
TspDTI ATGAA 5 cut(s) 180, 356, 500, 563, 755
VpaK11BI GGWCC 1 cut(s) 232
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 3 cut(s) 156, 373, 383
XbaI TCTAGA 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 4 cut(s) 275, 395, 599, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.