Rorug03G0148400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Reverse (-)
12196398 .. 12196631
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0148400.1

Sequence Viewer

Length: 234 bp
ATGGAGAAAATCAGTGGTGCGGTACAATGCAAAAGGTGTGATCAAAAGTATGAGATTGAGTACGATCTAGAACAGGAGTTCGAGCAAGTTGCGACTGATGTGTTCCAACACAAGAGCGCAATGCGTGACAGGGCACCTGTTGTTTGGATGAATACCACACTCCCCGATTGCAAGTTCTGTGGTCAAACCAATTGTGTGAAGCCTGAGCTGGACAAGAAGCGTTCGATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

77

Amino Acids

9.0

Weight (kDa)

5.77

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 2 - 77 2e-25 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AciI CCGC 1 cut(s) 20
AfaI GTAC 2 cut(s) 24, 62
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AspLEI GCGC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BclI TGATCA 1 cut(s) 40
BfaI CTAG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 126
BseGI GGATG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 40, 64, 225
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 126
BssMI GATC 3 cut(s) 40, 64, 225
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 3 cut(s) 43, 67, 228
BstMBI GATC 3 cut(s) 40, 64, 225
BstSLI GKGCMC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 19
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 23, 61
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 2 cut(s) 202, 208
CviKI_1 RGCY 2 cut(s) 202, 208
CviQI GTAC 2 cut(s) 23, 61
DdeI CTNAG 1 cut(s) 204
DpnI GATC 3 cut(s) 42, 66, 227
DpnII GATC 3 cut(s) 40, 64, 225
FaiI YATR 1 cut(s) 51
FbaI TGATCA 1 cut(s) 40
FokI GGATG 1 cut(s) 160
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 30, 171
HpyF3I CTNAG 1 cut(s) 204
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 64, 225
LpnPI CCDG 5 cut(s) 59, 115, 150, 194, 216
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 42, 66, 227
MboI GATC 3 cut(s) 40, 64, 225
MfeI CAATTG 2 cut(s) 190, 229
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 190, 229
MmeI TCCRAC 1 cut(s) 130
MunI CAATTG 2 cut(s) 190, 229
NdeII GATC 3 cut(s) 40, 64, 225
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 135
RsaI GTAC 2 cut(s) 24, 62
RsaNI GTAC 2 cut(s) 23, 61
Sau3AI GATC 3 cut(s) 40, 64, 225
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 38, 139, 210
Sse9I AATT 2 cut(s) 190, 229
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 68
TaqI TCGA 2 cut(s) 81, 224
TasI AATT 2 cut(s) 190, 229
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.