RLG00000003344

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
47442487 .. 47445313
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003344

Sequence Viewer

Length: 444 bp
ATGTATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCCTGTGCTGACCCCATGGTGGACAGATTGAGTAGTGTTCCATGCGAAGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTATTTACTTGGGTATGCATATTATGAACTTGACTGGTGACCTAGTCCCTCCAATGGTATCTCTTCTGAGAGGAATGCCTAATTTGAAGACTTTGTACATCAATTCGTACCCTTCCTTGCACATTGTTAAACCAAAAGCCTGTAGTTTTAAGAGGAAATACTGGAAATCCCAAAATCTGGATTGTAATCATCAGCTTGAGGAGGTATCAGTAGCACTCTCCACTGGTTATCCTCCTAATGCCTTGGAGTTAGCAACATATATTCTTGAGCATGCTCCGAAATTGAAGAAAATGGTGCTTGATGGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.19

Weight (kDa)

8.33

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 128, 310
AfaI GTAC 3 cut(s) 133, 230, 242
AfiI CCNNNNNNNGG 4 cut(s) 61, 128, 187, 310
AgsI TTSAA 2 cut(s) 220, 418
AluBI AGCT 2 cut(s) 35, 328
AluI AGCT 2 cut(s) 35, 328
AsuHPI GGTGA 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 2 cut(s) 122, 428
BfaI CTAG 2 cut(s) 176, 442
BfmI CTRYAG 1 cut(s) 274
BmiI GGNNCC 3 cut(s) 43, 109, 439
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 98
BpuEI CTTGAG 4 cut(s) 15, 21, 350, 419
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 57, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 128, 187, 310
Bse1I ACTGG 3 cut(s) 172, 299, 361
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 57, 375
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 4 cut(s) 61, 128, 187, 310
BseMII CTCAG 2 cut(s) 112, 191
BseNI ACTGG 3 cut(s) 172, 299, 361
BseRI GAGGAG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 4 cut(s) 61, 128, 187, 310
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 111, 192
BspLI GGNNCC 3 cut(s) 43, 109, 439
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 3 cut(s) 172, 299, 361
BssECI CCNNGG 2 cut(s) 57, 375
BssT1I CCWWGG 2 cut(s) 57, 375
Bst6I CTCTTC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 117, 405
BstDEI CTNAG 2 cut(s) 98, 200
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 119, 407
BstPI GGTNACC 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 117, 405
Csp6I GTAC 3 cut(s) 132, 229, 241
CviAII CATG 5 cut(s) 58, 84, 112, 116, 404
CviJI RGCY 4 cut(s) 35, 44, 272, 328
CviKI_1 RGCY 4 cut(s) 35, 44, 272, 328
CviQI GTAC 3 cut(s) 132, 229, 241
DdeI CTNAG 2 cut(s) 98, 200
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 57, 375
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 57, 375
EcoT22I ATGCAT 2 cut(s) 117, 153
ErhI CCWWGG 2 cut(s) 57, 375
FaeI CATG 5 cut(s) 61, 87, 115, 119, 407
FaqI GGGAC 1 cut(s) 164
FatI CATG 5 cut(s) 57, 83, 111, 115, 403
FokI GGATG 1 cut(s) 140
FspBI CTAG 2 cut(s) 176, 442
Hin1II CATG 5 cut(s) 61, 87, 115, 119, 407
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 201, 411
Hpy188III TCNNGA 2 cut(s) 311, 398
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 98, 255
HpyCH4V TGCA 4 cut(s) 23, 115, 151, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 98, 200
Hsp92II CATG 5 cut(s) 61, 87, 115, 119, 407
LmnI GCTCC 2 cut(s) 41, 412
LpnPI CCDG 7 cut(s) 58, 85, 153, 280, 286, 296, 342
MaeI CTAG 2 cut(s) 176, 442
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 3 cut(s) 188, 232, 430
MluCI AATT 3 cut(s) 214, 235, 413
MnlI CCTC 6 cut(s) 192, 197, 279, 325, 328, 375
Mph1103I ATGCAT 2 cut(s) 117, 153
MseI TTAA 2 cut(s) 261, 282
Mva1269I GAATGC 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 41
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 5 cut(s) 61, 87, 115, 119, 407
NlaIV GGNNCC 3 cut(s) 43, 109, 439
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 2 cut(s) 117, 153
NspI RCATGY 2 cut(s) 119, 407
PaeI GCATGC 2 cut(s) 119, 407
PctI GAATGC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 2 cut(s) 128, 310
PspEI GGTNACC 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 43, 109, 439
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 3 cut(s) 133, 230, 242
RsaNI GTAC 3 cut(s) 132, 229, 241
SaqAI TTAA 2 cut(s) 261, 282
SetI ASST 5 cut(s) 37, 109, 177, 330, 339
SfcI CTRYAG 1 cut(s) 274
SmlI CTYRAG 4 cut(s) 30, 36, 329, 398
SmoI CTYRAG 4 cut(s) 30, 36, 329, 398
SphI GCATGC 2 cut(s) 119, 407
Sse9I AATT 3 cut(s) 214, 235, 413
SspMI CTAG 2 cut(s) 176, 442
StyI CCWWGG 2 cut(s) 57, 375
TasI AATT 3 cut(s) 214, 235, 413
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 2 cut(s) 261, 282
Tru9I TTAA 2 cut(s) 261, 282
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 2 cut(s) 128, 310
XceI RCATGY 2 cut(s) 119, 407
XspI CTAG 2 cut(s) 176, 442
Zsp2I ATGCAT 2 cut(s) 117, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.