RchiOBHm_Chr7g0217271

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
35155337 .. 35156037
701 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19443

Sequence Viewer

Length: 414 bp
ATGGCTGCACCTATCTTTGATACTTCTTACTTGCGTATAAATATTGCGAACCTGAATAACGCTCTAGTCCCACCAATGGTCTCTCTTATGAGAGGAATGTCAAATTTGAATACTTTGGACATAAAGTCTGACCCTTCCTTATTCTTCCTCGAACCGAAAGCATGCGGATTTAATGGGAAATACTGGAAATCCCAAAACCTGGATTTTGTAAACCAGCTTAAGGAGGTAACAATAGAACTTTCAAATGGTAACAATGCATGGCAATTGGCAAGGTTTATTCTCGAGCATGCTCAGAATTTGAAGAAGATGACCATATTTTATTTACCCAGAAAATTACATGTTATTGATAAGGTAAGTAACAGCAAGAAGGTCTCCTCTGCCACAATTGACTTTCATGAGAAACAATGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

9.44

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 103, 295
AfiI CCNNNNNNNGG 3 cut(s) 76, 199, 220
AflII CTTAAG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 109, 243, 301
AhdI GACNNNNNGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 85, 376
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 103, 295
AvaI CYCGRG 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 85, 376
BfaI CTAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 200
BmeRI GACNNNNNGTC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 200
BsaI GGTCTC 2 cut(s) 85, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 199, 220
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 76, 199, 220
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 76, 199, 220
BsmAI GTCTC 2 cut(s) 85, 376
BsmFI GGGAC 1 cut(s) 53
Bso31I GGTCTC 2 cut(s) 85, 376
BsoBI CYCGRG 1 cut(s) 281
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 2 cut(s) 85, 376
BsrI ACTGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 163, 288
BstDEI CTNAG 1 cut(s) 291
BstMAI GTCTC 2 cut(s) 85, 376
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 3 cut(s) 165, 290, 341
BstSCI CCNGG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 163, 288
CciI TCATGA 1 cut(s) 394
CviAII CATG 5 cut(s) 162, 258, 287, 338, 395
CviJI RGCY 2 cut(s) 5, 217
CviKI_1 RGCY 2 cut(s) 5, 217
DdeI CTNAG 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
Eco31I GGTCTC 2 cut(s) 85, 376
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 259
FaeI CATG 5 cut(s) 165, 261, 290, 341, 398
FaqI GGGAC 1 cut(s) 53
FatI CATG 5 cut(s) 161, 257, 286, 337, 394
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 165, 261, 290, 341, 398
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 130, 294
Hpy188III TCNNGA 2 cut(s) 281, 395
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 144, 361
HpyCH4V TGCA 2 cut(s) 8, 257
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 5 cut(s) 165, 261, 290, 341, 398
LpnPI CCDG 6 cut(s) 65, 169, 185, 212, 227, 340
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 226, 248, 356
MboII GAAGA 3 cut(s) 136, 313, 316
MfeI CAATTG 2 cut(s) 263, 384
MluCI AATT 5 cut(s) 103, 263, 295, 332, 384
MnlI CCTC 4 cut(s) 86, 158, 217, 385
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 2 cut(s) 171, 219
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 2 cut(s) 263, 384
MvaI CCWGG 1 cut(s) 200
NlaIII CATG 5 cut(s) 165, 261, 290, 341, 398
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 3 cut(s) 165, 290, 341
PaeI GCATGC 2 cut(s) 165, 290
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 394
PciI ACATGT 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 1 cut(s) 7
PscI ACATGT 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 171, 219
SatI GCNGC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 200
SetI ASST 8 cut(s) 13, 54, 201, 219, 228, 275, 354, 372
Sfr274I CTCGAG 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 218, 281
SmoI CTYRAG 2 cut(s) 218, 281
SphI GCATGC 2 cut(s) 165, 290
Sse9I AATT 5 cut(s) 103, 263, 295, 332, 384
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 150, 282
TasI AATT 5 cut(s) 103, 263, 295, 332, 384
Tru1I TTAA 2 cut(s) 171, 219
Tru9I TTAA 2 cut(s) 171, 219
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 218
XapI RAATTY 2 cut(s) 103, 295
XceI RCATGY 3 cut(s) 165, 290, 341
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.