Rmu_sc0016637.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016637.1
OG0000155
Physical Location & Seq
Forward (+)
6304 .. 7359
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016637.1_g000001.1.cds

Sequence Viewer

Length: 1056 bp
atggcaactccaagttgtagtgaggtagacagattcagtgatctgccagacggagttgcccatcacattctctccttccttaccataccagacgtcgctcgttttggctatgtgtccaaaagatgcggacgacttcatctgtcgactcccacattgaaaattgaaggattttcgagggagaggttatcttcattggataagatctcaagcctgtggaatgcgttggatcgtgttatgaatcgtcgtggggatgataagatacacacctttcgttttcgtagcttctgcagagattgggactctagaatcatcaattggattgacaatgcaataaggtgtaatgttgaagtgcttgatcttgagctctgtatgatttctttgactcggctgtttgagtctatcttgctttgtgggtctctgaagtctttatcagtgggaatggagtttaagtatagattcctaacattaccctcctcggcttgtttttctaatattgaatgtttgaagttgaaaaacattgaggtagtggatgagggatttctcagatgggtctcatcttcgtgcaagtgcatgaaggagttacatcttgaagatattgaggggatagaacatctcactattgaaagttcacctttgcaatcgttcagttttgtgcatcgccgacagttggaccccatctatcttagcatttctgctgacaatctggaagatctagttattgattggggattttatggtcgcacaaagtcgttaaatatatttgcttccaaagttagatatatgaaatggacatggatattgtcgactcgccaaaattttggagaatttaagcttccggaacaagctgagctttttctgagacctagggggaatgactttctatttgagtttctcagagcaagttcactcgtagtaaaaaaaaggcaacgtcgagaagtcaagaattcgaccagtcaagttactattcattgccactggacatgggtttacacccgttgtttttcttgcccggtcaaaactattcacttttactgttcacactcactgttcacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

351

Amino Acids

40.98

Weight (kDa)

8.72

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccI GTMKAC 3 cut(s) 27, 143, 803
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 3 cut(s) 814, 824, 943
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 8 cut(s) 157, 164, 347, 497, 505, 511, 590, 623
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 5 cut(s) 282, 364, 832, 845, 850
AluI AGCT 5 cut(s) 282, 364, 832, 845, 850
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 3 cut(s) 420, 556, 853
AlwI GGATC 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 835
ApoI RAATTY 3 cut(s) 814, 824, 943
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AspA2I CCTAGG 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 670
AsuC2I CCSGG 1 cut(s) 1010
AsuHPI GGTGA 1 cut(s) 621
AvaII GGWCC 1 cut(s) 670
AvrII CCTAGG 1 cut(s) 863
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BccI CCATC 3 cut(s) 69, 540, 683
BcnI CCSGG 1 cut(s) 1010
BcoDI GTCTC 3 cut(s) 420, 556, 853
BfaI CTAG 3 cut(s) 303, 713, 864
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 2 cut(s) 201, 709
BlnI CCTAGG 1 cut(s) 863
BlpI GCTNAGC 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 1010
Bme18I GGWCC 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 670
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 1010
BmsI GCATC 2 cut(s) 113, 664
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 2 cut(s) 190, 380
BpuMI CCSGG 1 cut(s) 1010
BsaAI YACGTR 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 3 cut(s) 420, 556, 853
BsaJI CCNNGG 2 cut(s) 474, 863
BsaWI WCCGGW 1 cut(s) 835
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse1I ACTGG 2 cut(s) 951, 980
Bse3DI GCAATG 1 cut(s) 967
BseAI TCCGGA 1 cut(s) 835
BseDI CCNNGG 2 cut(s) 474, 863
BseGI GGATG 2 cut(s) 256, 535
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMI GCAATG 1 cut(s) 967
BseMII CTCAG 4 cut(s) 556, 837, 848, 907
BseNI ACTGG 2 cut(s) 951, 980
BseRI GAGGAG 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 836, 1010
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 3 cut(s) 420, 556, 853
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 223
Bso31I GGTCTC 3 cut(s) 420, 556, 853
Bsp1286I GDGCHC 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 835
Bsp143I GATC 5 cut(s) 40, 201, 226, 355, 709
Bsp1720I GCTNAGC 1 cut(s) 846
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 4 cut(s) 555, 838, 849, 906
BspEI TCCGGA 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 672
BspMAI CTGCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 3 cut(s) 420, 556, 853
BsrDI GCAATG 1 cut(s) 967
BsrI ACTGG 2 cut(s) 951, 980
BssECI CCNNGG 2 cut(s) 474, 863
BssMI GATC 5 cut(s) 40, 201, 226, 355, 709
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 863
Bst4CI ACNGT 3 cut(s) 666, 1034, 1047
BstACI GRCGYC 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 1053
BstDEI CTNAG 5 cut(s) 542, 683, 846, 857, 893
BstF5I GGATG 2 cut(s) 256, 535
BstKTI GATC 5 cut(s) 43, 204, 229, 358, 712
BstMAI GTCTC 3 cut(s) 420, 556, 853
BstMBI GATC 5 cut(s) 40, 201, 226, 355, 709
BstSCI CCNGG 1 cut(s) 1008
BstSFI CTRYAG 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 201, 709
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 2 cut(s) 201, 709
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 2 cut(s) 256, 535
BtsIMutI CAGTG 4 cut(s) 43, 438, 973, 1043
Cfr13I GGNCC 1 cut(s) 670
CviAII CATG 3 cut(s) 571, 792, 981
CviJI RGCY 9 cut(s) 108, 210, 282, 364, 388, 479, 832, 845, 850
CviKI_1 RGCY 9 cut(s) 108, 210, 282, 364, 388, 479, 832, 845, 850
DdeI CTNAG 5 cut(s) 542, 683, 846, 857, 893
DpnI GATC 5 cut(s) 42, 203, 228, 357, 711
DpnII GATC 5 cut(s) 40, 201, 226, 355, 709
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 863
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 3 cut(s) 420, 556, 853
Eco47I GGWCC 1 cut(s) 670
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 943
EcoT14I CCWWGG 1 cut(s) 863
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 3 cut(s) 574, 795, 984
FalI AAGNNNNNCTT 4 cut(s) 616, 648, 834, 866
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 570, 791, 980
FblI GTMKAC 3 cut(s) 27, 143, 803
FokI GGATG 2 cut(s) 263, 542
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 3 cut(s) 303, 713, 864
HapII CCGG 2 cut(s) 836, 1010
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 574, 795, 984
HincII GTYRAC 2 cut(s) 144, 804
HindII GTYRAC 2 cut(s) 144, 804
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 9 cut(s) 33, 145, 238, 299, 306, 382, 395, 456, 805
HpaII CCGG 2 cut(s) 836, 1010
HphI GGTGA 1 cut(s) 621
Hpy166II GTNNAC 8 cut(s) 28, 144, 629, 804, 905, 988, 1037, 1050
Hpy188I TCNGA 4 cut(s) 420, 545, 858, 896
Hpy188III TCNNGA 7 cut(s) 303, 359, 587, 704, 836, 932, 940
Hpy8I GTNNAC 8 cut(s) 28, 144, 629, 804, 905, 988, 1037, 1050
Hpy99I CGWCG 3 cut(s) 98, 246, 933
HpyAV CCTTC 3 cut(s) 85, 158, 568
HpyCH4III ACNGT 3 cut(s) 666, 1034, 1047
HpyCH4IV ACGT 3 cut(s) 93, 928, 1052
HpyCH4V TGCA 6 cut(s) 288, 329, 564, 570, 637, 655
HpyF3I CTNAG 5 cut(s) 542, 683, 846, 857, 893
HpySE526I ACGT 3 cut(s) 93, 928, 1052
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 574, 795, 984
Kpn2I TCCGGA 1 cut(s) 835
Kzo9I GATC 5 cut(s) 40, 201, 226, 355, 709
LpnPI CCDG 8 cut(s) 60, 102, 224, 689, 849, 961, 964, 1023
LweI GCATC 2 cut(s) 113, 664
MaeI CTAG 3 cut(s) 303, 713, 864
MaeII ACGT 3 cut(s) 93, 928, 1052
MaeIII GTNAC 2 cut(s) 579, 958
MalI GATC 5 cut(s) 42, 203, 228, 357, 711
MboI GATC 5 cut(s) 40, 201, 226, 355, 709
MboII GAAGA 4 cut(s) 180, 549, 602, 719
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 2 cut(s) 201, 709
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 5 cut(s) 159, 313, 814, 824, 943
MlyI GAGTC 5 cut(s) 139, 293, 376, 404, 799
MmeI TCCRAC 2 cut(s) 204, 648
MnlI CCTC 8 cut(s) 16, 168, 174, 481, 484, 514, 526, 592
MroI TCCGGA 1 cut(s) 835
MseI TTAA 3 cut(s) 447, 752, 828
MslI CAYNNNNRTG 1 cut(s) 559
MspI CCGG 2 cut(s) 836, 1010
MspR9I CCNGG 1 cut(s) 1010
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 1010
NdeII GATC 5 cut(s) 40, 201, 226, 355, 709
NlaIII CATG 3 cut(s) 574, 795, 984
NlaIV GGNNCC 1 cut(s) 672
NmeAIII GCCGAG 2 cut(s) 364, 455
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 33, 238, 306, 456
PleI GAGTC 5 cut(s) 139, 293, 376, 403, 799
PpsI GAGTC 5 cut(s) 139, 293, 376, 403, 799
Ppu21I YACGTR 1 cut(s) 1053
Psp124BI GAGCTC 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 670
PstI CTGCAG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 201, 709
RseI CAYNNNNRTG 1 cut(s) 559
SacI GAGCTC 1 cut(s) 366
SalI GTCGAC 2 cut(s) 142, 802
SaqAI TTAA 3 cut(s) 447, 752, 828
Sau3AI GATC 5 cut(s) 40, 201, 226, 355, 709
Sau96I GGNCC 1 cut(s) 670
SchI GAGTC 5 cut(s) 139, 293, 376, 404, 799
ScrFI CCNGG 1 cut(s) 1010
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 113, 664
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 2 cut(s) 205, 359
SmoI CTYRAG 2 cut(s) 205, 359
Sse9I AATT 5 cut(s) 159, 313, 814, 824, 943
SsiI CCGC 1 cut(s) 126
SspI AATATT 1 cut(s) 493
SspMI CTAG 3 cut(s) 303, 713, 864
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 1008
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 3 cut(s) 666, 1034, 1047
TaiI ACGT 3 cut(s) 96, 931, 1055
TaqI TCGA 5 cut(s) 143, 173, 803, 931, 947
TasI AATT 5 cut(s) 159, 313, 814, 824, 943
TfiI GAWTC 4 cut(s) 33, 238, 306, 456
Tru1I TTAA 3 cut(s) 447, 752, 828
Tru9I TTAA 3 cut(s) 447, 752, 828
TscAI CASTG 4 cut(s) 43, 438, 980, 1050
TspDTI ATGAA 6 cut(s) 125, 180, 251, 587, 797, 956
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 4 cut(s) 43, 438, 980, 1050
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 3 cut(s) 814, 824, 943
XbaI TCTAGA 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 863
XmiI GTMKAC 3 cut(s) 27, 143, 803
XspI CTAG 3 cut(s) 303, 713, 864
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.