Rorug07G0094000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000103
Physical Location & Seq
Forward (+)
7383044 .. 7388454
5411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0094000.1

Sequence Viewer

Length: 2526 bp
ATGACGTCATCGGAGGTTTCGATAAGGGACAACGGAGGAAACCAGAGAGGAGGAGAGAGCTTTTCTTCGGGTTTCAGCGACCACAACGACGGCAGGAATAATGCCGCGGAAAGGCAGAACGGTCACTCCACTGTCCCGGCGGCCGGCAGAGATGCTGAAACTGCACTCTACACGGAGCTGTGGCACGCCTGCGCCGGGCCGCTCGTGACCGTGCCACGTGAAGGGGAGCGTGTCTTTTATTTCCCTCAGGGACACATCGAGCAGGTGGAGGCGTCGACTAATCAGGTGGCTGACCAGCAGATGCCAGTGTATAATCTTCCACCGAAGTTACTTTGCAAGGTGATCAATGTTCAGTTGAAGGCTGAGCCTGACACAGATGAGGTATTTGCGCAAGTGACATTACTTCCTGAGCCAACTCAAGATGAGAATGCAGTGCAGAAGGAACCTCCCCCACCTCCGCCGCCAAGATTTCAAGTACATTCATTCTGTAAGACCTTAACAGCCTCAGACACGAGCACTCATGGAGGATTTTCTGTTCTAAGGCGGCATGCGGATGAATGCCTTCCACAACTGGACATGTCTCGCCAACCTCCAACCCAGGAGTTGGTTGCCAAAGATTTACATGGAAATGAGTGGCGCTTCCGACATATCTTCCGAGGTCAACCAAGGAGGCATCTGCTTCAAAGTGGTTGGAGTGTTTTCGTAAGCTCCAAGAGGCTTGTTGCAGGGGATGCATTTATATTTCTAAGGGGTGAAAATGGGGAGCTCCGTGTTGGTGTTAGACGTGCAATGCGACAGCAGGGCAATGTTCCATCTTCAGTAATATCTAGTCACAGCATGCACCTTGGTGTACTTGCAACTGCATGGCATGCCATTATGACAGGAACCATGTTCACTGTCTACTACAAGCCAAGGACAAGCCCTGCTGAGTTCATTGTTCCATTTGATCAGTACATGGAGTCTGTGAAAAACAACTATTCTATAGGGATGAGGTTTAAGATGAGGTTCGAAGGTGAAGAAGCTCCAGAGCAGAGGTTTACTGGCACCATAATTGGAATTGAAGATGCTGACCCGAAAAGGTGGCGAGATTCTAAATGGAGGTCCCTTAAGGTGAGATGGGATGAAAATTCAACCATACCTCGTCCAGAGAGAGTTTCATCTTGGAAAGTAGAGCCTGCTCTTGCTCCACCAGCACTAAATCCTCTTCCCATGCCACGGCCAAAGAGGCCGCGCCCAAACATGGTTCCCTCTTCTCCAGACTCTTCGGTTCTCACAAGAGAAGGATCATCTAAAGTAACGGTAGACCCTGTACTACAAGGAGGTGGGTATTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGAGGCAATTTTGTGGAGAGTGAGTCTGATACAGCTGAAAAGTCTACTGCATGGCCTGCTTCGGTTGATGATGAGAGGATTGATGCAGTGTCTGGTTCAAGAAGATTTGGTTCCAGTGCAGATAACTGGATGCCCTCAGGGAGACATGAGCCAACCTACACAGATTTGCTATCAGGCTTTGGGACTAATGGTGACGCCTCACATGGTATCTGTCAGCCCTTTGTTGATCAAGCAGTAGCATCTGCTAACTCAATGAGAAAGCATTCACTGGATCAGGAAGGCAAGTTTAACTTGAATTCATGGTCCATGTTACCCTCATCGCTGTCACTTAGCTTGGACTCTAATCAGAAGGTTCCTATTGGCAATGCATCTTACCAAGCCCAACAGAATGTTAGATATGGTGGATTGAATGATCATTCTGTTAACCATGTTCATAGAGTTGAGCAACCACAAGGAAATTGGATGATGCCTCCACCACCCCCATCTCATTTTGAGAGTCAAGCGAATGCACGGGAAGTCGTGCCAAAGCATATGTCACTACTGAAACATGAGCCTGTTAAACCTAAAGATGGAAGCTGCAAGCTCTTTGGCATTCCCCTCATAACACCAGAAACTTCATCACAGAGAACTGGAATGAATGAATCAGCTCGTCATAACCAAGCACTTACCTTGGAGTCTGACCAGAAGTTGGAAAAGTCAAGGGGACCAAAATCAGTGGATAATGTACTAGCTGTTAATGAGTCGGATAAACAAACTTCTCAGCAGCATGCCAGAGATGTTCAGGGTAAAGCACAAGGCTCTTCAACTAGGAGTTGCACAAAGGTTCACAAGCAGGGTATTGCACTTGGTAGGTCTGTTGATCTTACGAAGTTCAACAACTATGATGAACTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGTGAACTAATGGCCCCAAAAAAGAATTGGCTGATTGTTTATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCGTGGCAGGAATTTTGTGGCATAGTCCGGAAGATTTTTATCTACACGAGAGAGGAGGTTCAGAAAATGAACCCCGGGACCTTAACGTCACTGGGGGAGGAGAACCCAGCAATGCCTGCTGAGGGTGTGGATGCAAGAGAGGGAAAGTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

841

Amino Acids

93.51

Weight (kDa)

6.23

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 162 - 263 1.2e-22 B3 DNA binding domain
BRWD_AD PF25313 290 - 393 3.5e-08 BRWD/PHIP ancillary domain-like domain
ARF_AD PF06507 311 - 393 1.4e-35 Auxin response factor ancillary domain
AUX_IAA PF02309 696 - 813 7.1e-12 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 253
AasI GACNNNNNNGTC 1 cut(s) 2455
AatII GACGTC 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 1043
AccB7I CCANNNNNTGG 2 cut(s) 604, 2053
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 4 cut(s) 275, 900, 1302, 1409
AccII CGCG 2 cut(s) 107, 1231
AccIII TCCGGA 1 cut(s) 2397
AciI CCGC 9 cut(s) 105, 107, 140, 200, 458, 461, 544, 551, 1229
AclWI GGATC 3 cut(s) 1291, 1644, 2363
AcoI YGGCCR 2 cut(s) 141, 1217
AcsI RAATTY 5 cut(s) 1126, 1352, 1660, 2282, 2381
AcuI CTGAAG 1 cut(s) 801
AcvI CACGTG 1 cut(s) 218
AcyI GRCGYC 3 cut(s) 5, 272, 1560
AfaI GTAC 5 cut(s) 477, 852, 953, 1311, 2091
AflII CTTAAG 1 cut(s) 1106
AflIII ACRYGT 1 cut(s) 576
AjiI CACGTC 1 cut(s) 785
AjnI CCWGG 1 cut(s) 597
AleI CACNNNNGTG 1 cut(s) 846
AloI GAACNNNNNNTCC 4 cut(s) 110, 142, 519, 551
Alw21I GWGCWC 2 cut(s) 518, 768
Alw26I GTCTC 2 cut(s) 585, 1501
AlwI GGATC 3 cut(s) 1291, 1644, 2363
AlwNI CAGNNNCTG 1 cut(s) 1457
Ama87I CYCGRG 1 cut(s) 2444
Aor13HI TCCGGA 1 cut(s) 2397
AoxI GGCC 6 cut(s) 141, 197, 1217, 1226, 1418, 2301
ApeKI GCWGC 2 cut(s) 1941, 2128
ApoI RAATTY 5 cut(s) 1126, 1352, 1660, 2282, 2381
ArsI GACNNNNNNTTYG 4 cut(s) 1883, 1915, 2261, 2293
Asp700I GAANNNNTTC 2 cut(s) 561, 1627
AspLEI GCGC 4 cut(s) 194, 391, 639, 1233
AspS9I GGNCC 7 cut(s) 197, 1101, 1668, 2069, 2269, 2302, 2448
AsuC2I CCSGG 4 cut(s) 137, 196, 2445, 2446
AsuHPI GGTGA 7 cut(s) 352, 764, 1025, 1123, 1568, 2303, 2357
AsuII TTCGAA 1 cut(s) 1008
AvaI CYCGRG 1 cut(s) 2444
AvaII GGWCC 5 cut(s) 1101, 1668, 2069, 2269, 2448
AxyI CCTNAGG 2 cut(s) 246, 1501
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 768
BauI CACGAG 3 cut(s) 203, 511, 2416
BbrPI CACGTG 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 518, 768
BbvCI CCTCAGC 1 cut(s) 2490
BbvI GCAGC 2 cut(s) 1928, 2140
BccI CCATC 4 cut(s) 820, 1110, 1855, 1928
BceAI ACGGC 2 cut(s) 106, 1232
BciT130I CCWGG 1 cut(s) 599
BclI TGATCA 4 cut(s) 342, 946, 1591, 1777
BcnI CCSGG 4 cut(s) 137, 196, 2445, 2446
BcoDI GTCTC 2 cut(s) 585, 1501
BfaI CTAG 3 cut(s) 828, 2093, 2172
BfmI CTRYAG 1 cut(s) 981
BfoI RGCGCY 1 cut(s) 640
BfrI CTTAAG 1 cut(s) 1106
BfuAI ACCTGC 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 1225
BisI GCNGC 8 cut(s) 105, 141, 200, 461, 545, 1229, 1942, 2129
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 8 cut(s) 106, 142, 201, 462, 546, 1230, 1943, 2130
Bme1390I CCNGG 5 cut(s) 137, 196, 599, 2445, 2446
Bme18I GGWCC 5 cut(s) 1101, 1668, 2069, 2269, 2448
BmeT110I CYCGRG 1 cut(s) 2444
BmgBI CACGTC 1 cut(s) 785
BmgT120I GGNCC 7 cut(s) 197, 1101, 1668, 2069, 2269, 2302, 2448
BmrFI CCNGG 5 cut(s) 137, 196, 599, 2445, 2446
BmrI ACTGGG 1 cut(s) 2471
BmuI ACTGGG 1 cut(s) 2471
BpmI CTGGAG 2 cut(s) 1008, 1239
Bpu10I CCTNAGC 2 cut(s) 408, 2490
Bpu1102I GCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 402
BpuMI CCSGG 4 cut(s) 137, 196, 2445, 2446
BsaAI YACGTR 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 2408
BsaHI GRCGYC 3 cut(s) 5, 272, 1560
BsaWI WCCGGW 1 cut(s) 2397
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 1373, 1403
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 8 cut(s) 305, 576, 1045, 1479, 1496, 1638, 1999, 2466
Bse21I CCTNAGG 2 cut(s) 246, 1501
Bse3DI GCAATG 4 cut(s) 795, 811, 1735, 2487
Bse8I GATNNNNATC 1 cut(s) 2408
BseAI TCCGGA 1 cut(s) 2397
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 7 cut(s) 559, 736, 993, 1126, 1500, 1833, 2506
BseJI GATNNNNATC 1 cut(s) 2408
BseMI GCAATG 4 cut(s) 795, 811, 1735, 2487
BseMII CTCAG 8 cut(s) 260, 354, 399, 519, 918, 1515, 2138, 2481
BseNI ACTGG 8 cut(s) 305, 576, 1045, 1479, 1496, 1638, 1999, 2466
BseRI GAGGAG 4 cut(s) 63, 66, 2438, 2483
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 1928, 2140
BseYI CCCAGC 1 cut(s) 2476
BsgI GTGCAG 3 cut(s) 147, 455, 1503
Bsh1236I CGCG 2 cut(s) 107, 1231
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 6 cut(s) 143, 199, 1219, 1228, 1420, 2303
BshNI GGYRCC 1 cut(s) 1043
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 518, 768
BsiHKCI CYCGRG 1 cut(s) 2444
BsiSI CCGG 5 cut(s) 137, 144, 195, 2398, 2445
BslFI GGGAC 7 cut(s) 41, 119, 264, 1087, 1561, 2082, 2461
BsmAI GTCTC 2 cut(s) 585, 1501
BsmFI GGGAC 7 cut(s) 41, 119, 264, 1087, 1561, 2082, 2461
BsmI GAATGC 5 cut(s) 433, 563, 1627, 1876, 1956
BsnI GGCC 6 cut(s) 143, 199, 1219, 1228, 1420, 2303
BsoBI CYCGRG 1 cut(s) 2444
Bsp119I TTCGAA 1 cut(s) 1008
Bsp1286I GDGCHC 2 cut(s) 518, 768
Bsp13I TCCGGA 1 cut(s) 2397
Bsp143I GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 9 cut(s) 105, 107, 140, 200, 458, 461, 544, 551, 1229
BspANI GGCC 6 cut(s) 143, 199, 1219, 1228, 1420, 2303
BspCNI CTCAG 8 cut(s) 259, 355, 400, 518, 919, 1514, 2137, 2482
BspEI TCCGGA 1 cut(s) 2397
BspFNI CGCG 2 cut(s) 107, 1231
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 3 cut(s) 1291, 1644, 2363
BspQI GCTCTTC 1 cut(s) 2170
BspT104I TTCGAA 1 cut(s) 1008
BspT107I GGYRCC 1 cut(s) 1043
BspTI CTTAAG 1 cut(s) 1106
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 4 cut(s) 795, 811, 1735, 2487
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 8 cut(s) 305, 576, 1045, 1479, 1496, 1638, 1999, 2466
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
BssNI GRCGYC 3 cut(s) 5, 272, 1560
BssSI CACGAG 3 cut(s) 203, 511, 2416
BssT1I CCWWGG 4 cut(s) 665, 844, 911, 2034
Bst2BI CACGAG 3 cut(s) 203, 511, 2416
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 5 cut(s) 122, 133, 211, 898, 1300
Bst6I CTCTTC 4 cut(s) 1209, 1255, 1267, 2170
BstACI GRCGYC 3 cut(s) 5, 272, 1560
BstAFI CTTAAG 1 cut(s) 1106
BstAPI GCANNNNNTGC 4 cut(s) 731, 869, 1421, 2486
BstBAI YACGTR 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 1008
BstDSI CCRYGG 3 cut(s) 105, 1214, 2372
BstF5I GGATG 7 cut(s) 559, 736, 993, 1126, 1500, 1833, 2506
BstFNI CGCG 2 cut(s) 107, 1231
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 4 cut(s) 194, 391, 639, 1233
BstKTI GATC 8 cut(s) 345, 949, 1286, 1594, 1639, 1780, 2227, 2371
BstMAI GTCTC 2 cut(s) 585, 1501
BstMBI GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 7 cut(s) 161, 731, 869, 1190, 1225, 1421, 2486
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 5 cut(s) 551, 580, 841, 872, 2135
BstSCI CCNGG 5 cut(s) 135, 194, 597, 2443, 2444
BstSFI CTRYAG 1 cut(s) 981
BstUI CGCG 2 cut(s) 107, 1231
BstV1I GCAGC 2 cut(s) 1928, 2140
BstZI CGGCCG 1 cut(s) 141
Bsu36I CCTNAGG 2 cut(s) 246, 1501
BsuRI GGCC 6 cut(s) 143, 199, 1219, 1228, 1420, 2303
BtgI CCRYGG 3 cut(s) 105, 1214, 2372
BtgZI GCGATG 1 cut(s) 1668
BtrI CACGTC 1 cut(s) 785
BtsCI GGATG 7 cut(s) 559, 736, 993, 1126, 1500, 1833, 2506
BtsI GCAGTG 2 cut(s) 438, 1458
BtsIMutI CAGTG 9 cut(s) 129, 312, 438, 894, 1458, 1486, 1631, 2085, 2459
BveI ACCTGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 1457
CfoI GCGC 4 cut(s) 194, 391, 639, 1233
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 7 cut(s) 197, 1101, 1668, 2069, 2269, 2302, 2448
Cfr42I CCGCGG 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 2444
CseI GACGC 2 cut(s) 261, 1568
Csp6I GTAC 5 cut(s) 476, 851, 952, 1310, 2090
CspCI CAANNNNNGTGG 2 cut(s) 2061, 2096
CviQI GTAC 5 cut(s) 476, 851, 952, 1310, 2090
DpnI GATC 8 cut(s) 344, 948, 1285, 1593, 1638, 1779, 2226, 2370
DpnII GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
DrdI GACNNNNNNGTC 1 cut(s) 2455
DseDI GACNNNNNNGTC 1 cut(s) 2455
EaeI YGGCCR 2 cut(s) 141, 1217
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 1209, 1255, 1267, 2170
EarI CTCTTC 4 cut(s) 1209, 1255, 1267, 2170
EciI GGCGGA 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 766
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 4 cut(s) 665, 844, 911, 2034
Eco24I GRGCYC 1 cut(s) 768
Eco47I GGWCC 5 cut(s) 1101, 1668, 2069, 2269, 2448
Eco52I CGGCCG 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 801
Eco72I CACGTG 1 cut(s) 218
Eco81I CCTNAGG 2 cut(s) 246, 1501
Eco88I CYCGRG 1 cut(s) 2444
EcoICRI GAGCTC 1 cut(s) 766
EcoO109I RGGNCCY 2 cut(s) 1101, 2448
EcoRI GAATTC 2 cut(s) 1352, 1660
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 4 cut(s) 665, 844, 911, 2034
EcoT22I ATGCAT 2 cut(s) 736, 1735
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 4 cut(s) 665, 844, 911, 2034
FalI AAGNNNNNCTT 2 cut(s) 1640, 1672
FaqI GGGAC 7 cut(s) 41, 119, 264, 1087, 1561, 2082, 2461
FauNDI CATATG 1 cut(s) 1896
FbaI TGATCA 4 cut(s) 342, 946, 1591, 1777
FblI GTMKAC 4 cut(s) 275, 900, 1302, 1409
Fnu4HI GCNGC 8 cut(s) 105, 141, 200, 461, 545, 1229, 1942, 2129
FokI GGATG 7 cut(s) 566, 743, 1000, 1133, 1507, 1840, 2513
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 8 cut(s) 105, 141, 200, 461, 545, 1229, 1942, 2129
FspBI CTAG 3 cut(s) 828, 2093, 2172
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 4 cut(s) 193, 390, 638, 1232
GluI GCNGC 8 cut(s) 105, 141, 200, 461, 545, 1229, 1942, 2129
GsaI CCCAGC 1 cut(s) 2480
GsuI CTGGAG 2 cut(s) 1008, 1239
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 6 cut(s) 143, 199, 1219, 1228, 1420, 2303
HapII CCGG 5 cut(s) 137, 144, 195, 2398, 2445
HgaI GACGC 2 cut(s) 261, 1568
HhaI GCGC 4 cut(s) 194, 391, 639, 1233
Hin1I GRCGYC 3 cut(s) 5, 272, 1560
Hin6I GCGC 4 cut(s) 192, 389, 637, 1231
HinP1I GCGC 4 cut(s) 192, 389, 637, 1231
HincII GTYRAC 3 cut(s) 276, 662, 1789
HindII GTYRAC 3 cut(s) 276, 662, 1789
HinfI GANTC 9 cut(s) 959, 1088, 1259, 1388, 1703, 1861, 2006, 2039, 2105
HpaI GTTAAC 1 cut(s) 1789
HpaII CCGG 5 cut(s) 137, 144, 195, 2398, 2445
HphI GGTGA 7 cut(s) 352, 764, 1025, 1123, 1568, 2303, 2357
Hpy188I TCNGA 9 cut(s) 13, 508, 644, 656, 1393, 1713, 2044, 2110, 2433
Hpy99I CGWCG 2 cut(s) 92, 277
HpyAV CCTTC 8 cut(s) 215, 352, 433, 572, 1004, 1274, 1637, 1708
HpyCH4III ACNGT 5 cut(s) 122, 133, 211, 898, 1300
HpyCH4IV ACGT 4 cut(s) 5, 217, 784, 2456
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 731, 869, 1190, 1225, 1421, 2486
HpySE526I ACGT 4 cut(s) 5, 217, 784, 2456
Hsp92I GRCGYC 3 cut(s) 5, 272, 1560
HspAI GCGC 4 cut(s) 192, 389, 637, 1231
Kpn2I TCCGGA 1 cut(s) 2397
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Ksp22I TGATCA 4 cut(s) 342, 946, 1591, 1777
KspAI GTTAAC 1 cut(s) 1789
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
LguI GCTCTTC 1 cut(s) 2170
LmnI GCTCC 7 cut(s) 175, 226, 713, 763, 771, 1027, 1189
Lsp1109I GCAGC 2 cut(s) 1928, 2140
MaeI CTAG 3 cut(s) 828, 2093, 2172
MaeII ACGT 4 cut(s) 5, 217, 784, 2456
MalI GATC 8 cut(s) 344, 948, 1285, 1593, 1638, 1779, 2226, 2370
MbiI CCGCTC 1 cut(s) 202
MboI GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
MfeI CAATTG 1 cut(s) 2273
MhlI GDGCHC 2 cut(s) 518, 768
MlyI GAGTC 7 cut(s) 968, 1253, 1397, 1697, 1870, 2048, 2114
MmeI TCCRAC 6 cut(s) 617, 667, 671, 2034, 2088, 2341
Mph1103I ATGCAT 2 cut(s) 736, 1735
MroI TCCGGA 1 cut(s) 2397
MroNI GCCGGC 1 cut(s) 143
MroXI GAANNNNTTC 2 cut(s) 561, 1627
MseI TTAA 8 cut(s) 497, 996, 1107, 1653, 1788, 1923, 2100, 2453
MslI CAYNNNNRTG 3 cut(s) 552, 627, 846
MspA1I CMGCKG 2 cut(s) 107, 1400
MspCI CTTAAG 1 cut(s) 1106
MspI CCGG 5 cut(s) 137, 144, 195, 2398, 2445
MspR9I CCNGG 5 cut(s) 137, 196, 599, 2445, 2446
MunI CAATTG 1 cut(s) 2273
Mva1269I GAATGC 5 cut(s) 433, 563, 1627, 1876, 1956
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 2 cut(s) 107, 1231
MwoI GCNNNNNNNGC 7 cut(s) 161, 731, 869, 1190, 1225, 1421, 2486
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 4 cut(s) 137, 196, 2445, 2446
NdeI CATATG 1 cut(s) 1896
NdeII GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
NgoMIV GCCGGC 1 cut(s) 143
NmuCI GTSAC 9 cut(s) 122, 205, 394, 830, 1556, 1689, 1899, 2345, 2457
NsbI TGCGCA 1 cut(s) 390
NsiI ATGCAT 2 cut(s) 736, 1735
NspI RCATGY 5 cut(s) 551, 580, 841, 872, 2135
NspV TTCGAA 1 cut(s) 1008
OliI CACNNNNGTG 1 cut(s) 846
PaeI GCATGC 4 cut(s) 551, 841, 872, 2135
PaqCI CACCTGC 1 cut(s) 253
PciI ACATGT 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 2170
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 790
PctI GAATGC 5 cut(s) 433, 563, 1627, 1876, 1956
PdiI GCCGGC 1 cut(s) 145
PdmI GAANNNNTTC 2 cut(s) 561, 1627
PfeI GAWTC 2 cut(s) 1088, 2006
PflMI CCANNNNNTGG 2 cut(s) 604, 2053
PkrI GCNGC 8 cut(s) 106, 142, 201, 462, 546, 1230, 1943, 2130
PleI GAGTC 7 cut(s) 967, 1253, 1396, 1697, 1869, 2047, 2113
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 7 cut(s) 967, 1253, 1396, 1697, 1869, 2047, 2113
Ppu21I YACGTR 1 cut(s) 218
PpuMI RGGWCCY 2 cut(s) 1101, 2448
PscI ACATGT 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 768
Psp5II RGGWCCY 2 cut(s) 1101, 2448
Psp6I CCWGG 1 cut(s) 597
PspCI CACGTG 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 2476
PspGI CCWGG 1 cut(s) 597
PspPI GGNCC 7 cut(s) 197, 1101, 1668, 2069, 2269, 2302, 2448
PspPPI RGGWCCY 2 cut(s) 1101, 2448
PstNI CAGNNNCTG 1 cut(s) 1457
PvuII CAGCTG 1 cut(s) 1400
RsaI GTAC 5 cut(s) 477, 852, 953, 1311, 2091
RsaNI GTAC 5 cut(s) 476, 851, 952, 1310, 2090
RseI CAYNNNNRTG 3 cut(s) 552, 627, 846
SacI GAGCTC 1 cut(s) 768
SacII CCGCGG 1 cut(s) 108
SalI GTCGAC 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 2170
SaqAI TTAA 8 cut(s) 497, 996, 1107, 1653, 1788, 1923, 2100, 2453
SatI GCNGC 8 cut(s) 105, 141, 200, 461, 545, 1229, 1942, 2129
Sau3AI GATC 8 cut(s) 342, 946, 1283, 1591, 1636, 1777, 2224, 2368
Sau96I GGNCC 7 cut(s) 197, 1101, 1668, 2069, 2269, 2302, 2448
SchI GAGTC 7 cut(s) 968, 1253, 1397, 1697, 1870, 2048, 2114
ScrFI CCNGG 5 cut(s) 137, 196, 599, 2445, 2446
SduI GDGCHC 2 cut(s) 518, 768
SfcI CTRYAG 1 cut(s) 981
SfiI GGCCNNNNNGGCC 1 cut(s) 1225
Sfr303I CCGCGG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 1008
SgrBI CCGCGG 1 cut(s) 108
SinI GGWCC 5 cut(s) 1101, 1668, 2069, 2269, 2448
SmaI CCCGGG 1 cut(s) 2446
SmiMI CAYNNNNRTG 3 cut(s) 552, 627, 846
SmlI CTYRAG 2 cut(s) 417, 1106
SmoI CTYRAG 2 cut(s) 417, 1106
SphI GCATGC 4 cut(s) 551, 841, 872, 2135
SsiI CCGC 9 cut(s) 105, 107, 140, 200, 458, 461, 544, 551, 1229
SspMI CTAG 3 cut(s) 828, 2093, 2172
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 5 cut(s) 135, 194, 597, 2443, 2444
StyI CCWWGG 4 cut(s) 665, 844, 911, 2034
TaaI ACNGT 5 cut(s) 122, 133, 211, 898, 1300
TaiI ACGT 4 cut(s) 8, 220, 787, 2459
TaqI TCGA 5 cut(s) 20, 258, 275, 1008, 1358
TatI WGTACW 5 cut(s) 475, 850, 951, 1309, 2089
TauI GCSGC 6 cut(s) 107, 143, 202, 463, 547, 1231
TfiI GAWTC 2 cut(s) 1088, 2006
Tru1I TTAA 8 cut(s) 497, 996, 1107, 1653, 1788, 1923, 2100, 2453
Tru9I TTAA 8 cut(s) 497, 996, 1107, 1653, 1788, 1923, 2100, 2453
TscAI CASTG 9 cut(s) 136, 312, 438, 901, 1458, 1486, 1638, 2085, 2466
TseFI GTSAC 9 cut(s) 122, 205, 394, 830, 1556, 1689, 1899, 2345, 2457
TseI GCWGC 2 cut(s) 1941, 2128
Tsp45I GTSAC 9 cut(s) 122, 205, 394, 830, 1556, 1689, 1899, 2345, 2457
TspGWI ACGGA 4 cut(s) 48, 188, 758, 2361
TspMI CCCGGG 1 cut(s) 2444
TspRI CASTG 9 cut(s) 136, 312, 438, 901, 1458, 1486, 1638, 2085, 2466
Van91I CCANNNNNTGG 2 cut(s) 604, 2053
Vha464I CTTAAG 1 cut(s) 1106
VpaK11BI GGWCC 5 cut(s) 1101, 1668, 2069, 2269, 2448
XapI RAATTY 5 cut(s) 1126, 1352, 1660, 2282, 2381
XceI RCATGY 5 cut(s) 551, 580, 841, 872, 2135
XcmI CCANNNNNNNNNTGG 2 cut(s) 1821, 2313
XmaI CCCGGG 1 cut(s) 2444
XmiI GTMKAC 4 cut(s) 275, 900, 1302, 1409
XmnI GAANNNNTTC 2 cut(s) 561, 1627
XspI CTAG 3 cut(s) 828, 2093, 2172
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 2 cut(s) 736, 1735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.