FvH4_2g27110

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000103
Physical Location & Seq
Forward (+)
21603701 .. 21605248
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27110.t1

Sequence Viewer

Length: 540 bp
ATGAAGGATAGTAAAAGAGCCAGCTCGTGTTCGGATTTGATGGAGGTGGATAGACTAAGCAACTTACCGAGCGATATTGCAGAAAAGATATTGTCACTCTTGCCGATTAGGGATGCAGTGAGGACGAGTGTTTTGTCAAGTAATTGGAGGTACAAATCTGCTATGCTACCGCATTTGGTGTTTGATGATGAGTGCATCCCAACTGATCACTATACATTTGCGAGTATAGTTGATCATGTACTCATGAGTCACATTGGCCCCATACACATGTTCAAGCTTGCTCAAGAATATTTATTGTTCAGAGATATCGATCGGTGGATACTTCATCTGTCAAGAAACTCTGTTAAAGAGTTCATACTCGAAAAACCTTGTGGAGATTACCAACCCTCCTACTTGATGCCTGCATGTATGTTTGCCTGTCAAGACTTGATACGGTTACACTTATACAAGTGTTCGCTGCAACCTCCGCCCATTCAAAGGCTTCAGAAGCTTGATAAATCTTCATCTGGAACAAGTTACTCTAGATCAAGATGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

8.15

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 52 1.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 170, 467
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 2 cut(s) 152, 240
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 274, 476
AluBI AGCT 3 cut(s) 24, 277, 490
AluI AGCT 3 cut(s) 24, 277, 490
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspS9I GGNCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 25
BbvI GCAGC 1 cut(s) 444
BccI CCATC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 2 cut(s) 205, 232
BfaI CTAG 1 cut(s) 522
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 3 cut(s) 103, 204, 387
BpuEI CTTGAG 1 cut(s) 267
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 2 cut(s) 118, 195
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 477
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 4 cut(s) 205, 232, 310, 524
BspACI CCGC 2 cut(s) 170, 467
BspANI GGCC 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 309
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 259
BssMI GATC 4 cut(s) 205, 232, 310, 524
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 22, 279, 402
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 118, 195
BstKTI GATC 4 cut(s) 208, 235, 313, 527
BstMBI GATC 4 cut(s) 205, 232, 310, 524
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 466, 487
BstNSI RCATGY 2 cut(s) 271, 408
BstV1I GCAGC 1 cut(s) 444
Bsu15I ATCGAT 1 cut(s) 309
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 2 cut(s) 118, 195
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 22, 279, 402
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 2 cut(s) 151, 239
CviAII CATG 4 cut(s) 236, 244, 268, 405
CviJI RGCY 6 cut(s) 20, 24, 258, 277, 481, 490
CviKI_1 RGCY 6 cut(s) 20, 24, 258, 277, 481, 490
CviQI GTAC 2 cut(s) 151, 239
DdeI CTNAG 1 cut(s) 56
DpnI GATC 4 cut(s) 207, 234, 312, 526
DpnII GATC 4 cut(s) 205, 232, 310, 524
EciI GGCGGA 1 cut(s) 456
Eco32I GATATC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 467
EcoRV GATATC 1 cut(s) 307
FaeI CATG 4 cut(s) 239, 247, 271, 408
FalI AAGNNNNNCTT 1 cut(s) 520
FatI CATG 4 cut(s) 235, 243, 267, 404
FbaI TGATCA 2 cut(s) 205, 232
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 2 cut(s) 125, 182
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 4 cut(s) 239, 247, 271, 408
HindIII AAGCTT 2 cut(s) 275, 488
HinfI GANTC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 34, 302, 486
Hpy188III TCNNGA 7 cut(s) 244, 284, 333, 422, 507, 522, 528
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 5 cut(s) 80, 116, 195, 404, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 487
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 4 cut(s) 239, 247, 271, 408
Ksp22I TGATCA 2 cut(s) 205, 232
Kzo9I GATC 4 cut(s) 205, 232, 310, 524
LpnPI CCDG 4 cut(s) 34, 414, 430, 492
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 3 cut(s) 103, 204, 387
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 4 cut(s) 93, 248, 435, 515
MalI GATC 4 cut(s) 207, 234, 312, 526
MboI GATC 4 cut(s) 205, 232, 310, 524
MboII GAAGA 1 cut(s) 492
MluCI AATT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 5 cut(s) 37, 114, 141, 397, 474
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 466, 487
NdeII GATC 4 cut(s) 205, 232, 310, 524
NlaIII CATG 4 cut(s) 239, 247, 271, 408
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 93, 248
NspI RCATGY 2 cut(s) 271, 408
PagI TCATGA 1 cut(s) 243
PciI ACATGT 1 cut(s) 267
PkrI GCNGC 1 cut(s) 459
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PscI ACATGT 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 257
PvuI CGATCG 1 cut(s) 313
RsaI GTAC 2 cut(s) 152, 240
RsaNI GTAC 2 cut(s) 151, 239
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 4 cut(s) 205, 232, 310, 524
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 256
SetI ASST 7 cut(s) 26, 48, 152, 279, 370, 466, 492
SfaNI GCATC 3 cut(s) 103, 204, 387
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 1 cut(s) 142
SsiI CCGC 2 cut(s) 170, 467
SspI AATATT 1 cut(s) 290
SspMI CTAG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 309, 360
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 2 cut(s) 93, 248
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 2 cut(s) 93, 248
TspDTI ATGAA 4 cut(s) 17, 314, 343, 492
TspRI CASTG 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 2 cut(s) 271, 408
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.