Rroxscaffold_3G00234080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000103
Physical Location & Seq
Reverse (-)
20407342 .. 20414776
7435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234080.1

Sequence Viewer

Length: 849 bp
ATGGAGCTAGGTCCTGCTGAAAACGTCCCATATATGCTTCTAAAAATTGAACCAATCACATTAAGCAGCAACCACGCCGCATGGAATTTACAAACACCCAAAACACAACCCCAATATGGTTGCAGTTTTGACAAGGAGGTTGATTTTCCTCAAGATGGTAAGCCCAAATTTGATCTCGACATTGAGCCTATTGTTGATATATATGAAGAAGACGAGCCAATTCATGGCTTTGATCTACTCGTAGGGCTAAAGCACCATCAAGAGGTTGATTATTTAAGTGAGGATGTTGTACACTTTGACATGGTTGTCGGTAATAAAGCCGACTTAGAAAAATCACAATCGGCTAAATTTGAAGTAGAAGCTGAAGTTGGTAATTCAAGTACATATGCAGAGTTTGAAAATTTGGCCTACATAATAGCCAGAGAACAAGAACCTACTACATGGGGTTTAAGTTTAATGCTTCACAGCCTCCAAAGGCTTGAACCAAAGGCTGAAAACAAAGAAGTTTCCAAGTTTGCGATAAAGCATCAAGCAACATCGGTGAAGACGCTGAAAGTCCTTGCAACAAAGGCAAGAGAACCCAGCGGCCGAGAAGGTTCCTTCCTCGGCCCACAGTCACTTGAAAGAAGTCAGATCAAGCGCAAATCTTATCAAAACCTCGCTTGGCCAATTGGCCGCGAGTTGGCACGCCTGCGTATCAAGAAGGACAATTGGACCGCAAGTCTCTTGGCCTCTAATTTTGGCCGAGACAATTTTGAGGCAAACAGACTAACTATAGGATTTATTGAATGTGAACTGAAACCCTCGGGACACTTGCGTACGCGCCACACGCGCGGAGAAAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

5.9

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 224
AccII CGCG 4 cut(s) 678, 823, 832, 834
AciI CCGC 5 cut(s) 78, 585, 676, 717, 834
AcoI YGGCCR 4 cut(s) 586, 665, 673, 742
AcsI RAATTY 4 cut(s) 85, 167, 347, 400
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 291, 382, 820
AfiI CCNNNNNNNGG 5 cut(s) 116, 155, 224, 262, 682
AgsI TTSAA 7 cut(s) 50, 353, 378, 398, 482, 623, 788
AhdI GACNNNNNGTC 1 cut(s) 720
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 2 cut(s) 7, 362
AluI AGCT 2 cut(s) 7, 362
Alw26I GTCTC 2 cut(s) 728, 741
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 7 cut(s) 405, 586, 607, 665, 673, 729, 742
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 4 cut(s) 85, 167, 347, 400
AspLEI GCGC 3 cut(s) 642, 825, 834
AspS9I GGNCC 3 cut(s) 11, 608, 714
AsuHPI GGTGA 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 2 cut(s) 11, 714
BalI TGGCCA 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 216, 551
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 149, 264
BcoDI GTCTC 2 cut(s) 728, 741
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 4 cut(s) 67, 78, 586, 676
BlsI GCNGC 4 cut(s) 68, 79, 587, 677
Bme18I GGWCC 2 cut(s) 11, 714
BmeRI GACNNNNNGTC 1 cut(s) 720
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 3 cut(s) 11, 608, 714
BmiI GGNNCC 1 cut(s) 598
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 216, 551
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 604, 804
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 155, 224, 262, 682
BseDI CCNNGG 2 cut(s) 604, 804
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 5 cut(s) 116, 155, 224, 262, 682
BseX3I CGGCCG 1 cut(s) 586
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 4 cut(s) 678, 823, 832, 834
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 7 cut(s) 407, 588, 609, 667, 675, 731, 744
BsiEI CGRYCG 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 805
BsiWI CGTACG 1 cut(s) 818
BslFI GGGAC 2 cut(s) 11, 822
BslI CCNNNNNNNGG 5 cut(s) 116, 155, 224, 262, 682
BsmAI GTCTC 2 cut(s) 728, 741
BsmFI GGGAC 2 cut(s) 11, 822
BsnI GGCC 7 cut(s) 407, 588, 609, 667, 675, 731, 744
BsoBI CYCGRG 1 cut(s) 805
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 172, 232, 633
BspACI CCGC 5 cut(s) 78, 585, 676, 717, 834
BspANI GGCC 7 cut(s) 407, 588, 609, 667, 675, 731, 744
BspFNI CGCG 4 cut(s) 678, 823, 832, 834
BspLI GGNNCC 1 cut(s) 598
BsrGI TGTACA 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 604, 804
BssMI GATC 3 cut(s) 172, 232, 633
Bst4CI ACNGT 1 cut(s) 615
BstAUI TGTACA 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 688, 692
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 4 cut(s) 678, 823, 832, 834
BstHHI GCGC 3 cut(s) 642, 825, 834
BstKTI GATC 3 cut(s) 175, 235, 636
BstMAI GTCTC 2 cut(s) 728, 741
BstMBI GATC 3 cut(s) 172, 232, 633
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 569, 829, 831
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 4 cut(s) 678, 823, 832, 834
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 216, 551
BstZI CGGCCG 1 cut(s) 586
BsuRI GGCC 7 cut(s) 407, 588, 609, 667, 675, 731, 744
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 688, 692
CfoI GCGC 3 cut(s) 642, 825, 834
Cfr13I GGNCC 3 cut(s) 11, 608, 714
CseI GACGC 1 cut(s) 556
Csp6I GTAC 3 cut(s) 290, 381, 819
CviAII CATG 4 cut(s) 81, 224, 301, 441
CviQI GTAC 3 cut(s) 290, 381, 819
DdeI CTNAG 1 cut(s) 325
DpnI GATC 3 cut(s) 174, 234, 635
DpnII GATC 3 cut(s) 172, 232, 633
DrdI GACNNNNNNGTC 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 720
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 4 cut(s) 586, 665, 673, 742
EagI CGGCCG 1 cut(s) 586
Eam1105I GACNNNNNGTC 1 cut(s) 720
EclXI CGGCCG 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 11, 714
Eco52I CGGCCG 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 11
FaeI CATG 4 cut(s) 84, 227, 304, 444
FaqI GGGAC 2 cut(s) 11, 822
FatI CATG 4 cut(s) 80, 223, 300, 440
FauNDI CATATG 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 67, 78, 586, 676
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 67, 78, 586, 676
FspBI CTAG 1 cut(s) 8
GlaI GCGC 3 cut(s) 641, 824, 833
GluI GCNGC 4 cut(s) 67, 78, 586, 676
GsaI CCCAGC 1 cut(s) 585
HaeIII GGCC 7 cut(s) 407, 588, 609, 667, 675, 731, 744
HgaI GACGC 1 cut(s) 556
HhaI GCGC 3 cut(s) 642, 825, 834
Hin1II CATG 4 cut(s) 84, 227, 304, 444
Hin6I GCGC 3 cut(s) 640, 823, 832
HinP1I GCGC 3 cut(s) 640, 823, 832
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 2 cut(s) 292, 794
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 5 cut(s) 152, 176, 260, 700, 807
Hpy8I GTNNAC 2 cut(s) 292, 794
HpyAV CCTTC 3 cut(s) 587, 610, 697
HpyCH4III ACNGT 1 cut(s) 615
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 123, 389, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 569, 829, 831
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 84, 227, 304, 444
HspAI GCGC 3 cut(s) 640, 823, 832
Kzo9I GATC 3 cut(s) 172, 232, 633
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 27, 433, 595, 704
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 615
MalI GATC 3 cut(s) 174, 234, 635
MboI GATC 3 cut(s) 172, 232, 633
MboII GAAGA 3 cut(s) 218, 221, 556
MfeI CAATTG 2 cut(s) 669, 709
MlsI TGGCCA 1 cut(s) 667
MluNI TGGCCA 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 667
MscI TGGCCA 1 cut(s) 667
MseI TTAA 4 cut(s) 62, 275, 449, 455
Msp20I TGGCCA 1 cut(s) 667
MspA1I CMGCKG 1 cut(s) 585
MunI CAATTG 2 cut(s) 669, 709
MvnI CGCG 4 cut(s) 678, 823, 832, 834
MwoI GCNNNNNNNGC 3 cut(s) 569, 829, 831
NdeI CATATG 1 cut(s) 385
NdeII GATC 3 cut(s) 172, 232, 633
NlaIII CATG 4 cut(s) 84, 227, 304, 444
NlaIV GGNNCC 1 cut(s) 598
NmeAIII GCCGAG 3 cut(s) 585, 614, 770
NmuCI GTSAC 1 cut(s) 615
Pfl23II CGTACG 1 cut(s) 818
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 4 cut(s) 68, 79, 587, 677
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 581
PspLI CGTACG 1 cut(s) 818
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 3 cut(s) 11, 608, 714
PspPPI RGGWCCY 1 cut(s) 11
RsaI GTAC 3 cut(s) 291, 382, 820
RsaNI GTAC 3 cut(s) 290, 381, 819
SaqAI TTAA 4 cut(s) 62, 275, 449, 455
SatI GCNGC 4 cut(s) 67, 78, 586, 676
Sau3AI GATC 3 cut(s) 172, 232, 633
Sau96I GGNCC 3 cut(s) 11, 608, 714
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 2 cut(s) 11, 714
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SsiI CCGC 5 cut(s) 78, 585, 676, 717, 834
SspMI CTAG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 615
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 177
TatI WGTACW 2 cut(s) 289, 380
TauI GCSGC 3 cut(s) 80, 588, 678
Tru1I TTAA 4 cut(s) 62, 275, 449, 455
Tru9I TTAA 4 cut(s) 62, 275, 449, 455
TseFI GTSAC 1 cut(s) 615
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 615
TspDTI ATGAA 2 cut(s) 212, 219
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 11, 714
XapI RAATTY 4 cut(s) 85, 167, 347, 400
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.