Rmu_sc0001562.1_g000005

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001562.1
Physical Location & Seq
Reverse (-)
31793 .. 33331
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001562.1_g000005.1.cds

Sequence Viewer

Length: 774 bp
atgcaaagagaaccaccaaggtaccgcttgaaaatggatattgagtttgacaatctcagtgacttaccaagtgatgttacggaaaagattttgtcatttttgccaatgaaagaggcagtgaggacaagtatattatcaagcaagtggaggtacaaatggactatgcttccagatcttttgtttgatgaactgggtttcccaggagtactttataagcatgacaaattagtgaaaatggttgatcatgtgctcttccttcacatttgtccaataaacaaggtcaagctttctcataaaggtcttaatggcaccgcagatattgatagatggattcttcatctatcaagaaattctatgagagagttcatatttaggttttggaaaaagcctgaatacaagatgccttcatgtgcttttgaggatcttagttttcagaacaccttaaagcttacaggtatttgcatttctttggaagctaatagcgaccaaagaccggttcgtcaagagggacaggctcttgtgggagaggtgaactcttggttagatgacaaccagaatttccaactcagaaaactgcaaattgtggaagtacatggcatcagtagcaccaaagctggactagatttcatcaaatttctgcttttaaattcaccaatgcttgagaaggtgttttgcatgcctgtatctcactatagttctcctgcactattaaaaaagatgatccagtttaagcgttcctcatcccttgcggagataatctacttggacccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

29.92

Weight (kDa)

8.93

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AasI GACNNNNNNGTC 1 cut(s) 498
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 2 cut(s) 21, 308
AciI CCGC 3 cut(s) 25, 312, 749
AclWI GGATC 2 cut(s) 429, 715
AcsI RAATTY 4 cut(s) 349, 556, 632, 646
AfaI GTAC 4 cut(s) 23, 152, 207, 591
AfiI CCNNNNNNNGG 1 cut(s) 493
AgeI ACCGGT 1 cut(s) 493
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 4 cut(s) 286, 448, 476, 614
AluI AGCT 4 cut(s) 286, 448, 476, 614
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 2 cut(s) 429, 715
ApoI RAATTY 4 cut(s) 349, 556, 632, 646
AsiGI ACCGGT 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 2 cut(s) 541, 642
AvaII GGWCC 1 cut(s) 766
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 2 cut(s) 21, 308
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 241
BfaI CTAG 1 cut(s) 620
BfmI CTRYAG 1 cut(s) 691
BglII AGATCT 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 3 cut(s) 23, 310, 768
BmrFI CCNGG 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 390, 606
BmuI ACTGGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 17, 199
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse118I RCCGGY 1 cut(s) 493
Bse1I ACTGG 2 cut(s) 195, 724
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 17, 199
BseGI GGATG 1 cut(s) 740
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 70, 580
BseNI ACTGG 2 cut(s) 195, 724
BsgI GTGCAG 1 cut(s) 687
BshNI GGYRCC 2 cut(s) 21, 308
BshTI ACCGGT 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 172, 241, 421, 720
BspACI CCGC 3 cut(s) 25, 312, 749
BspCNI CTCAG 2 cut(s) 69, 579
BspLI GGNNCC 3 cut(s) 23, 310, 768
BspPI GGATC 2 cut(s) 429, 715
BspQI GCTCTTC 1 cut(s) 257
BspT107I GGYRCC 2 cut(s) 21, 308
BsrFI RCCGGY 1 cut(s) 493
BsrI ACTGG 2 cut(s) 195, 724
BssAI RCCGGY 1 cut(s) 493
BssECI CCNNGG 2 cut(s) 17, 199
BssMI GATC 4 cut(s) 172, 241, 421, 720
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 677
BstDEI CTNAG 3 cut(s) 56, 425, 566
BstF5I GGATG 1 cut(s) 740
BstKTI GATC 4 cut(s) 175, 244, 424, 723
BstMBI GATC 4 cut(s) 172, 241, 421, 720
BstMWI GCNNNNNNNGC 1 cut(s) 603
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 691
BstX2I RGATCY 2 cut(s) 172, 421
BstYI RGATCY 2 cut(s) 172, 421
BtsCI GGATG 1 cut(s) 740
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 64, 123
Cac8I GCNNGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 766
Csp6I GTAC 4 cut(s) 22, 151, 206, 590
CspAI ACCGGT 1 cut(s) 493
CviAII CATG 6 cut(s) 218, 245, 408, 593, 676, 771
CviJI RGCY 6 cut(s) 286, 388, 448, 476, 515, 614
CviKI_1 RGCY 6 cut(s) 286, 388, 448, 476, 515, 614
CviQI GTAC 4 cut(s) 22, 151, 206, 590
DdeI CTNAG 3 cut(s) 56, 425, 566
DpnI GATC 4 cut(s) 174, 243, 423, 722
DpnII GATC 4 cut(s) 172, 241, 421, 720
DraI TTTAAA 1 cut(s) 645
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 6 cut(s) 221, 248, 411, 596, 679, 774
FaqI GGGAC 1 cut(s) 522
FatI CATG 6 cut(s) 217, 244, 407, 592, 675, 770
FbaI TGATCA 1 cut(s) 241
FokI GGATG 1 cut(s) 727
FspBI CTAG 1 cut(s) 620
HapII CCGG 1 cut(s) 494
Hin1II CATG 6 cut(s) 221, 248, 411, 596, 679, 774
HindIII AAGCTT 2 cut(s) 284, 446
HinfI GANTC 1 cut(s) 331
HpaII CCGG 1 cut(s) 494
HphI GGTGA 2 cut(s) 541, 642
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 435, 569
Hpy188III TCNNGA 3 cut(s) 170, 345, 503
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 3 cut(s) 266, 414, 658
HpyCH4V TGCA 5 cut(s) 4, 462, 577, 675, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 603
HpyF3I CTNAG 3 cut(s) 56, 425, 566
Hsp92II CATG 6 cut(s) 221, 248, 411, 596, 679, 774
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 172, 241, 421, 720
LguI GCTCTTC 1 cut(s) 257
LweI GCATC 2 cut(s) 390, 606
MaeI CTAG 1 cut(s) 620
MaeIII GTNAC 2 cut(s) 59, 76
MalI GATC 4 cut(s) 174, 243, 423, 722
MboI GATC 4 cut(s) 172, 241, 421, 720
MboII GAAGA 2 cut(s) 244, 326
MflI RGATCY 2 cut(s) 172, 421
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 6 cut(s) 224, 349, 556, 579, 632, 646
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 7 cut(s) 106, 114, 141, 412, 499, 520, 748
MseI TTAA 5 cut(s) 303, 443, 644, 710, 729
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 603
NdeII GATC 4 cut(s) 172, 241, 421, 720
NlaIII CATG 6 cut(s) 221, 248, 411, 596, 679, 774
NlaIV GGNNCC 3 cut(s) 23, 310, 768
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 679
PaeI GCATGC 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 493
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 23, 310, 768
PspPI GGNCC 1 cut(s) 766
PsuI RGATCY 2 cut(s) 172, 421
RsaI GTAC 4 cut(s) 23, 152, 207, 591
RsaNI GTAC 4 cut(s) 22, 151, 206, 590
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 5 cut(s) 303, 443, 644, 710, 729
Sau3AI GATC 4 cut(s) 172, 241, 421, 720
Sau96I GGNCC 1 cut(s) 766
ScaI AGTACT 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 2 cut(s) 390, 606
SfcI CTRYAG 1 cut(s) 691
SinI GGWCC 1 cut(s) 766
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SphI GCATGC 1 cut(s) 679
Sse9I AATT 6 cut(s) 224, 349, 556, 579, 632, 646
SsiI CCGC 3 cut(s) 25, 312, 749
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 17
TasI AATT 6 cut(s) 224, 349, 556, 579, 632, 646
TatI WGTACW 2 cut(s) 205, 589
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 5 cut(s) 303, 443, 644, 710, 729
Tru9I TTAA 5 cut(s) 303, 443, 644, 710, 729
TscAI CASTG 2 cut(s) 64, 123
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 6 cut(s) 122, 201, 326, 355, 396, 616
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 64, 123
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 4 cut(s) 349, 556, 632, 646
XceI RCATGY 1 cut(s) 679
XspI CTAG 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.