Rorug05G0532600

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
72072321 .. 72076393
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0532600.1

Sequence Viewer

Length: 810 bp
ATGGCTGAAGAGAACAAGAATACTGTGAAGGAGGAGGTTCCAGATATTGTCCCCTTTGATCGTACTAAAAAGAAGAAAAAGAAGAAGGTGGTAATTCGGGATTCTTCAAGCGATTCTGTGGACAAGTTGGCTGACAAAACAGAAAACCTAGCAGTTTCTGATGGACAGGAAAGTGCATTTTCTGTTTTGAAAAAGAAGAAGAAGAAGCCAGTTGAATCCAGTGTCTTGAATGAAGTGGGTGGTGATACAAGGGAAGATTTGGATGACGGGACTGGGGATGATGAAGAGGGAGAAGGAATTGTTTTAGGGGCTTCACATCCATGGGAAGGAAGTGATCGTGACTACCACTATGAGGAGCTTCTTGGTAGGGTTTTCAATATCCTTCGGGAGAATAATCCTGAGCTGGCTGGCGACAGGCGTAGGACAACTATGAGGCCTCCACAAGTACTTCGTGAGGGCACAAAGAAAACTGTCTTTGTTAATTTCATGGACTTATGTAAGACGATGCATAGGCAGCCGGATCATGTTATGGCCTTTTTACTGGCTGAACTGGGGACAAGTGGATCCCTTGACGGTCAGCAGAGGTTAGTTGTAAAGGGAAGATTTGCACCCAAGAATTTTGAAGGAATACTACGGCGCTATGTCAACGAATATGTCATTTGCATTGGGTGCAAGAGTCCTGACACTATACTTTCCAAGGAGAATCGCCTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCCGGACGATCTGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGGCGAAGAAATGCTGGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

8.84

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 138 - 247 5.6e-40 Domain found in IF2B/IF5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 740
AclWI GGATC 3 cut(s) 528, 558, 571
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 64, 447
AfiI CCNNNNNNNGG 2 cut(s) 326, 352
AgsI TTSAA 6 cut(s) 108, 190, 215, 229, 376, 623
AluBI AGCT 3 cut(s) 358, 403, 767
AluI AGCT 3 cut(s) 358, 403, 767
AlwI GGATC 3 cut(s) 528, 558, 571
AlwNI CAGNNNCTG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 740
AoxI GGCC 2 cut(s) 434, 531
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 616
AspLEI GCGC 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 563
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BauI CACGAG 1 cut(s) 780
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 650
BfaI CTAG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
BmcAI AGTACT 1 cut(s) 447
BmiI GGNNCC 3 cut(s) 39, 565, 739
BmrI ACTGGG 2 cut(s) 282, 560
BmsI GCATC 2 cut(s) 495, 713
BmuI ACTGGG 2 cut(s) 282, 560
Bpu10I CCTNAGC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 320, 696
BsaWI WCCGGW 1 cut(s) 740
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 352
Bse1I ACTGG 5 cut(s) 209, 219, 277, 546, 555
BseAI TCCGGA 1 cut(s) 740
BseDI CCNNGG 2 cut(s) 320, 696
BseGI GGATG 3 cut(s) 268, 283, 316
BseLI CCNNNNNNNGG 2 cut(s) 326, 352
BseMII CTCAG 2 cut(s) 390, 733
BseNI ACTGG 5 cut(s) 209, 219, 277, 546, 555
BseRI GAGGAG 2 cut(s) 47, 368
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 800
BshFI GGCC 2 cut(s) 436, 533
BsiSI CCGG 2 cut(s) 518, 741
BslFI GGGAC 3 cut(s) 35, 283, 568
BslI CCNNNNNNNGG 2 cut(s) 326, 352
BsmFI GGGAC 3 cut(s) 35, 283, 568
BsnI GGCC 2 cut(s) 436, 533
Bsp1286I GDGCHC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 740
Bsp143I GATC 5 cut(s) 58, 334, 520, 563, 746
Bsp19I CCATGG 1 cut(s) 320
BspANI GGCC 2 cut(s) 436, 533
BspCNI CTCAG 2 cut(s) 391, 732
BspEI TCCGGA 1 cut(s) 740
BspLI GGNNCC 3 cut(s) 39, 565, 739
BspPI GGATC 3 cut(s) 528, 558, 571
BsrI ACTGG 5 cut(s) 209, 219, 277, 546, 555
BssECI CCNNGG 2 cut(s) 320, 696
BssMI GATC 5 cut(s) 58, 334, 520, 563, 746
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 320, 696
Bst2BI CACGAG 1 cut(s) 780
Bst4CI ACNGT 3 cut(s) 25, 472, 575
Bst6I CTCTTC 3 cut(s) 3, 279, 716
BstAPI GCANNNNNTGC 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 405, 409
BstDEI CTNAG 2 cut(s) 399, 719
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 3 cut(s) 268, 283, 316
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 5 cut(s) 61, 337, 523, 566, 749
BstMBI GATC 5 cut(s) 58, 334, 520, 563, 746
BstMWI GCNNNNNNNGC 2 cut(s) 514, 669
BstSLI GKGCMC 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BsuRI GGCC 2 cut(s) 436, 533
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 268, 283, 316
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 405, 409
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 639
Csp6I GTAC 2 cut(s) 63, 446
CviAII CATG 4 cut(s) 321, 487, 524, 807
CviQI GTAC 2 cut(s) 63, 446
DdeI CTNAG 2 cut(s) 399, 719
DpnI GATC 5 cut(s) 60, 336, 522, 565, 748
DpnII GATC 5 cut(s) 58, 334, 520, 563, 746
Eam1104I CTCTTC 3 cut(s) 3, 279, 716
EarI CTCTTC 3 cut(s) 3, 279, 716
Eco130I CCWWGG 2 cut(s) 320, 696
Eco147I AGGCCT 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 320, 696
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 320, 696
FaeI CATG 4 cut(s) 324, 490, 527, 810
FaqI GGGAC 3 cut(s) 35, 283, 568
FatI CATG 4 cut(s) 320, 486, 523, 806
Fnu4HI GCNGC 1 cut(s) 515
FokI GGATG 3 cut(s) 275, 290, 303
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 515
GsaI CCCAGC 1 cut(s) 804
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 436, 533
HapII CCGG 2 cut(s) 518, 741
HhaI GCGC 1 cut(s) 639
Hin1II CATG 4 cut(s) 324, 490, 527, 810
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 5 cut(s) 101, 113, 215, 676, 703
HpaII CCGG 2 cut(s) 518, 741
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 121, 646
Hpy188I TCNGA 2 cut(s) 160, 722
Hpy188III TCNNGA 9 cut(s) 41, 98, 226, 338, 386, 398, 452, 680, 741
Hpy8I GTNNAC 2 cut(s) 121, 646
HpyAV CCTTC 6 cut(s) 22, 79, 287, 320, 392, 617
HpyCH4III ACNGT 3 cut(s) 25, 472, 575
HpyCH4V TGCA 5 cut(s) 176, 508, 608, 663, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 514, 669
HpyF3I CTNAG 2 cut(s) 399, 719
Hsp92II CATG 4 cut(s) 324, 490, 527, 810
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 740
Kzo9I GATC 5 cut(s) 58, 334, 520, 563, 746
LmnI GCTCC 2 cut(s) 355, 760
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 2 cut(s) 495, 713
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 338
MalI GATC 5 cut(s) 60, 336, 522, 565, 748
MboI GATC 5 cut(s) 58, 334, 520, 563, 746
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 5 cut(s) 93, 297, 481, 616, 759
MlyI GAGTC 1 cut(s) 685
MnlI CCTC 9 cut(s) 25, 28, 280, 346, 426, 447, 448, 576, 719
Mph1103I ATGCAT 1 cut(s) 510
MroI TCCGGA 1 cut(s) 740
MseI TTAA 2 cut(s) 480, 762
MslI CAYNNNNRTG 1 cut(s) 319
MspI CCGG 2 cut(s) 518, 741
MwoI GCNNNNNNNGC 2 cut(s) 514, 669
NcoI CCATGG 1 cut(s) 320
NdeII GATC 5 cut(s) 58, 334, 520, 563, 746
NlaIII CATG 4 cut(s) 324, 490, 527, 810
NlaIV GGNNCC 3 cut(s) 39, 565, 739
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 510
PceI AGGCCT 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 787
PfeI GAWTC 4 cut(s) 101, 113, 215, 703
PkrI GCNGC 1 cut(s) 516
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 800
PspN4I GGNNCC 3 cut(s) 39, 565, 739
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 563
RsaI GTAC 2 cut(s) 64, 447
RsaNI GTAC 2 cut(s) 63, 446
RseI CAYNNNNRTG 1 cut(s) 319
SaqAI TTAA 2 cut(s) 480, 762
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 5 cut(s) 58, 334, 520, 563, 746
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 1 cut(s) 685
SduI GDGCHC 1 cut(s) 461
SetI ASST 7 cut(s) 39, 90, 150, 360, 405, 587, 769
SfaNI GCATC 2 cut(s) 495, 713
SmiMI CAYNNNNRTG 1 cut(s) 319
Sse9I AATT 5 cut(s) 93, 297, 481, 616, 759
SseBI AGGCCT 1 cut(s) 436
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 436
StyI CCWWGG 2 cut(s) 320, 696
TaaI ACNGT 3 cut(s) 25, 472, 575
TasI AATT 5 cut(s) 93, 297, 481, 616, 759
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 4 cut(s) 101, 113, 215, 703
Tru1I TTAA 2 cut(s) 480, 762
Tru9I TTAA 2 cut(s) 480, 762
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 246, 297, 475
TspRI CASTG 1 cut(s) 226
XapI RAATTY 1 cut(s) 616
XspI CTAG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.