Rorug05G0533300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000103
Physical Location & Seq
Reverse (-)
72130290 .. 72133731
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0533300.1

Sequence Viewer

Length: 1254 bp
ATGGCATCGGCGATGGTCCTGGACCCGAAACCCCTACCGGAGCCACCGGCTTCGCTGCCCTCCCTCAGATCCGACCCGGCCTTCACCGACCCGAACTCCGACGAAGACTCCGATCTCTACAGCCGCCTCAAGGCGCTTCAGCGCCAGAACGAGTTCATCGACATCAAGGAGGAGTACGTCAAGGACGAGCAGAAGAATCTGAAGCGCGAGATGCTGCGGTCGCAGGAGGAGGTGAAGCGGATCCAGTCGGTGCCGCTGGTGATCGGCCAGTTTCTCGAGATGGTCGACGAGAACCACGGCATTGTGGGCTCCACCACGGGGTCCAATTACTACGTGAGGATTCTGAGCACGATTAACCGGGAGCATCTGAAGCCGTCGGCCTCGGTGGCGTTGCACCGCCACTCCAATGCTCTTGTGGATGTTCTGCCGCCGGAGGCGGACTCCAGTATCTCGCTGCTCAGCCAGTCGGAGAAGCCCGACGTCACCTACAGTGATATTGGAGGATGCGATATTCAGAAGCAAGAAATCCGTGAAGCAGTGGAACTTCCACTTACTCACCATGACTTATACAAACAGATTGGAATAGATCCTCCACGTGGTGTATTGCTCTATGGTCCACCTGGAACTGGTAAAACCATGCTAGCTAAGGCTGTGGCTAACCATACAACTGCTGCTTTCATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTATTTGGGTGAGGGTCCACGAATGGTTCGTGATGTTTTCCGCCTTGCCAAGGAGAATGCACCTGCCATCATCTTTATTGATGAGGTTGATGCTATTGCTACTGCAAGGTTTGATGCTCAAACTGGAGCTGATAGAGAAGTTCAACGAATCCTAATGGAGCTCCTCAATCAGATGGATGGGTTTGACCAGACTGTAAACGTTAAGGTCATAATGGCTACTAATCGTGCAGACACTTTGGATCCTGCACTTCTGCGTCCCGGAAGGCTTGACCGTAAGATTGAATTTCCTTTGCCTGATAGGCGTCAGAAAAGGCTTGTTTTTCAGGTTTGCACTGCTAAAATGAACTTGAGTGATGAGGTAGACTTGGAAGATTATGTATCTCGGCCAGATAAAATCAGCGCTGCTGAGATTACAGCTATCTGTCAAGAAGCCGGAATGCACGCAGTTCGCAAGAACCGATATGTCATACTCCCAAAGGACTTTGAAAAGGGTTATCAAACCAATGTGAAGAAGCCTGATACTGACTTTGAATTCTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

417

Amino Acids

46.9

Weight (kDa)

5.47

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 88 - 143 2.9e-12 Proteasomal ATPase OB C-terminal domain
AAA_5 PF07728 200 - 322 6.7e-08 AAA domain (dynein-related subfamily)
AAA PF00004 201 - 334 2.1e-45 ATPase family associated with various cellular activities (AAA)
AAA_2 PF07724 201 - 294 2.9e-06 AAA domain (Cdc48 subfamily)
AAA_lid_3 PF17862 357 - 400 6.8e-07 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 781
AatII GACGTC 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 285, 1071
AccII CGCG 1 cut(s) 207
AciI CCGC 8 cut(s) 124, 217, 238, 254, 397, 428, 437, 751
AclI AACGTT 1 cut(s) 909
AclWI GGATC 6 cut(s) 63, 235, 248, 581, 944, 957
AcoI YGGCCR 2 cut(s) 265, 1094
AcsI RAATTY 3 cut(s) 698, 992, 1241
AcuI CTGAAG 3 cut(s) 122, 221, 389
AcvI CACGTG 1 cut(s) 596
AcyI GRCGYC 2 cut(s) 480, 1012
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 1111
AfiI CCNNNNNNNGG 5 cut(s) 130, 318, 596, 626, 760
AgsI TTSAA 4 cut(s) 854, 992, 1196, 1241
AjnI CCWGG 2 cut(s) 18, 619
AluBI AGCT 4 cut(s) 644, 839, 871, 1127
AluI AGCT 4 cut(s) 644, 839, 871, 1127
Alw21I GWGCWC 2 cut(s) 350, 873
AlwI GGATC 6 cut(s) 63, 235, 248, 581, 944, 957
Ama87I CYCGRG 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 1111
AoxI GGCC 4 cut(s) 78, 265, 378, 1094
ApeKI GCWGC 5 cut(s) 55, 214, 454, 671, 1112
ApoI RAATTY 3 cut(s) 698, 992, 1241
Asp700I GAANNNNTTC 2 cut(s) 152, 702
AspLEI GCGC 4 cut(s) 136, 144, 207, 1112
AspS9I GGNCC 5 cut(s) 16, 22, 321, 614, 725
AsuC2I CCSGG 3 cut(s) 77, 359, 969
AsuHPI GGTGA 6 cut(s) 76, 244, 271, 475, 548, 731
AsuNHI GCTAGC 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 5 cut(s) 16, 22, 321, 614, 725
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BamHI GGATCC 2 cut(s) 240, 949
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 2 cut(s) 311, 873
BbrPI CACGTG 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 350, 873
BbvI GCAGC 5 cut(s) 42, 201, 441, 658, 1099
BccI CCATC 5 cut(s) 7, 274, 785, 877, 881
BceAI ACGGC 2 cut(s) 313, 358
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BciT130I CCWGG 2 cut(s) 20, 621
BcnI CCSGG 3 cut(s) 77, 359, 969
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 2 cut(s) 118, 487
BfoI RGCGCY 3 cut(s) 137, 145, 1113
BfuAI ACCTGC 1 cut(s) 781
BglI GCCNNNNNGGC 2 cut(s) 386, 1009
BisI GCNGC 8 cut(s) 56, 124, 215, 254, 428, 455, 672, 1113
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 8 cut(s) 57, 125, 216, 255, 429, 456, 673, 1114
Bme1390I CCNGG 5 cut(s) 20, 77, 359, 621, 969
Bme18I GGWCC 5 cut(s) 16, 22, 321, 614, 725
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 5 cut(s) 16, 22, 321, 614, 725
BmiI GGNNCC 8 cut(s) 24, 42, 242, 252, 310, 322, 726, 951
BmrFI CCNGG 5 cut(s) 20, 77, 359, 621, 969
BmsI GCATC 6 cut(s) 14, 201, 373, 494, 790, 814
BmtI GCTAGC 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 2 cut(s) 427, 855
Bpu10I CCTNAGC 1 cut(s) 645
Bpu1102I GCTNAGC 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 113, 1078
BpuMI CCSGG 3 cut(s) 77, 359, 969
BsaAI YACGTR 2 cut(s) 334, 596
BsaHI GRCGYC 2 cut(s) 480, 1012
BsaJI CCNNGG 4 cut(s) 295, 315, 381, 759
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 6 cut(s) 80, 92, 110, 122, 386, 416
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 318, 596, 626, 760
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 6 cut(s) 244, 268, 444, 463, 631, 838
BseBI CCWGG 2 cut(s) 20, 621
BseDI CCNNGG 4 cut(s) 295, 315, 381, 759
BseGI GGATG 3 cut(s) 424, 509, 892
BseLI CCNNNNNNNGG 5 cut(s) 130, 318, 596, 626, 760
BseMII CTCAG 4 cut(s) 79, 335, 472, 1107
BseNI ACTGG 6 cut(s) 244, 268, 444, 463, 631, 838
BseRI GAGGAG 3 cut(s) 185, 242, 863
BseXI GCAGC 5 cut(s) 42, 201, 441, 658, 1099
BsgI GTGCAG 2 cut(s) 939, 957
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 80, 267, 380, 1096
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 350, 873
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 7 cut(s) 38, 47, 77, 358, 431, 969, 1143
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 5 cut(s) 130, 318, 596, 626, 760
BsmFI GGGAC 1 cut(s) 951
BsmI GAATGC 2 cut(s) 772, 1152
BsnI GGCC 4 cut(s) 80, 267, 380, 1096
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 3 cut(s) 311, 350, 873
Bsp143I GATC 6 cut(s) 68, 112, 240, 261, 586, 949
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 8 cut(s) 124, 217, 238, 254, 397, 428, 437, 751
BspANI GGCC 4 cut(s) 80, 267, 380, 1096
BspCNI CTCAG 4 cut(s) 78, 336, 471, 1108
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 8 cut(s) 24, 42, 242, 252, 310, 322, 726, 951
BspMI ACCTGC 1 cut(s) 781
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 6 cut(s) 63, 235, 248, 581, 944, 957
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 6 cut(s) 244, 268, 444, 463, 631, 838
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 4 cut(s) 295, 315, 381, 759
BssMI GATC 6 cut(s) 68, 112, 240, 261, 586, 949
BssNI GRCGYC 2 cut(s) 480, 1012
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 2 cut(s) 20, 621
Bst4CI ACNGT 3 cut(s) 491, 904, 983
BstACI GRCGYC 2 cut(s) 480, 1012
BstBAI YACGTR 2 cut(s) 334, 596
BstC8I GCNNGC 2 cut(s) 642, 1152
BstDEI CTNAG 5 cut(s) 65, 344, 458, 645, 1116
BstDSI CCRYGG 2 cut(s) 295, 315
BstENI CCTNNNNNAGG 1 cut(s) 758
BstF5I GGATG 3 cut(s) 424, 509, 892
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 3 cut(s) 137, 145, 1113
BstHHI GCGC 4 cut(s) 136, 144, 207, 1112
BstKTI GATC 6 cut(s) 71, 115, 243, 264, 589, 952
BstMBI GATC 6 cut(s) 68, 112, 240, 261, 586, 949
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 6 cut(s) 211, 220, 306, 370, 386, 1009
BstNI CCWGG 2 cut(s) 20, 621
BstSCI CCNGG 5 cut(s) 18, 75, 357, 619, 967
BstSFI CTRYAG 2 cut(s) 118, 487
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 42, 201, 441, 658, 1099
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 4 cut(s) 68, 240, 586, 949
BstYI RGATCY 4 cut(s) 68, 240, 586, 949
BsuRI GGCC 4 cut(s) 80, 267, 380, 1096
BtgI CCRYGG 2 cut(s) 295, 315
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 3 cut(s) 424, 509, 892
BtsI GCAGTG 2 cut(s) 543, 1041
BtsIMutI CAGTG 3 cut(s) 496, 543, 1041
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 2 cut(s) 642, 1152
CfoI GCGC 4 cut(s) 136, 144, 207, 1112
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 5 cut(s) 16, 22, 321, 614, 725
CseI GACGC 2 cut(s) 953, 1001
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 560, 637
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 5 cut(s) 65, 344, 458, 645, 1116
DpnI GATC 6 cut(s) 70, 114, 242, 263, 588, 951
DpnII GATC 6 cut(s) 68, 112, 240, 261, 586, 949
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 2 cut(s) 265, 1094
EciI GGCGGA 2 cut(s) 452, 740
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 2 cut(s) 311, 873
Eco47I GGWCC 5 cut(s) 16, 22, 321, 614, 725
Eco47III AGCGCT 1 cut(s) 1111
Eco53kI GAGCTC 1 cut(s) 871
Eco57I CTGAAG 3 cut(s) 122, 221, 389
Eco72I CACGTG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 871
EcoNI CCTNNNNNAGG 1 cut(s) 758
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 2 cut(s) 18, 619
EcoT14I CCWWGG 1 cut(s) 759
EcoT38I GRGCYC 2 cut(s) 311, 873
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 2 cut(s) 563, 640
FaiI YATR 9 cut(s) 561, 568, 612, 638, 663, 920, 1086, 1173, 1178
FaqI GGGAC 1 cut(s) 951
FatI CATG 2 cut(s) 559, 636
FblI GTMKAC 2 cut(s) 285, 1071
Fnu4HI GCNGC 8 cut(s) 56, 124, 215, 254, 428, 455, 672, 1113
FokI GGATG 3 cut(s) 431, 516, 899
FriOI GRGCYC 2 cut(s) 311, 873
Fsp4HI GCNGC 8 cut(s) 56, 124, 215, 254, 428, 455, 672, 1113
FspBI CTAG 1 cut(s) 641
GlaI GCGC 4 cut(s) 135, 143, 206, 1111
GluI GCNGC 8 cut(s) 56, 124, 215, 254, 428, 455, 672, 1113
GsuI CTGGAG 2 cut(s) 427, 855
HaeII RGCGCY 3 cut(s) 137, 145, 1113
HaeIII GGCC 4 cut(s) 80, 267, 380, 1096
HapII CCGG 7 cut(s) 38, 47, 77, 358, 431, 969, 1143
HgaI GACGC 2 cut(s) 953, 1001
HhaI GCGC 4 cut(s) 136, 144, 207, 1112
Hin1I GRCGYC 2 cut(s) 480, 1012
Hin1II CATG 2 cut(s) 563, 640
Hin6I GCGC 4 cut(s) 134, 142, 205, 1110
HinP1I GCGC 4 cut(s) 134, 142, 205, 1110
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 5 cut(s) 107, 196, 340, 440, 858
HpaII CCGG 7 cut(s) 38, 47, 77, 358, 431, 969, 1143
HphI GGTGA 6 cut(s) 76, 244, 271, 475, 548, 731
Hpy166II GTNNAC 5 cut(s) 286, 617, 728, 907, 1072
Hpy188III TCNNGA 4 cut(s) 275, 277, 740, 1136
Hpy8I GTNNAC 5 cut(s) 286, 617, 728, 907, 1072
Hpy99I CGWCG 4 cut(s) 104, 290, 379, 482
HpyAV CCTTC 2 cut(s) 91, 966
HpyCH4III ACNGT 3 cut(s) 491, 904, 983
HpyCH4IV ACGT 5 cut(s) 177, 333, 480, 595, 909
HpyCH4V TGCA 7 cut(s) 394, 770, 815, 938, 956, 1041, 1150
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 220, 306, 370, 386, 1009
HpyF3I CTNAG 5 cut(s) 65, 344, 458, 645, 1116
HpySE526I ACGT 5 cut(s) 177, 333, 480, 595, 909
Hsp92I GRCGYC 2 cut(s) 480, 1012
Hsp92II CATG 2 cut(s) 563, 640
HspAI GCGC 4 cut(s) 134, 142, 205, 1110
Kzo9I GATC 6 cut(s) 68, 112, 240, 261, 586, 949
LmnI GCTCC 6 cut(s) 40, 314, 361, 836, 868, 876
Lsp1109I GCAGC 5 cut(s) 42, 201, 441, 658, 1099
LweI GCATC 6 cut(s) 14, 201, 373, 494, 790, 814
MaeI CTAG 1 cut(s) 641
MaeII ACGT 5 cut(s) 177, 333, 480, 595, 909
MaeIII GTNAC 1 cut(s) 481
MalI GATC 6 cut(s) 70, 114, 242, 263, 588, 951
MboI GATC 6 cut(s) 68, 112, 240, 261, 586, 949
MboII GAAGA 4 cut(s) 116, 205, 1091, 1231
MflI RGATCY 4 cut(s) 68, 240, 586, 949
MhlI GDGCHC 3 cut(s) 311, 350, 873
MluCI AATT 4 cut(s) 325, 698, 992, 1241
MlyI GAGTC 2 cut(s) 101, 434
MmeI TCCRAC 3 cut(s) 96, 123, 447
MroXI GAANNNNTTC 2 cut(s) 152, 702
MseI TTAA 2 cut(s) 354, 912
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 7 cut(s) 38, 47, 77, 358, 431, 969, 1143
MspR9I CCNGG 5 cut(s) 20, 77, 359, 621, 969
Mva1269I GAATGC 2 cut(s) 772, 1152
MvaI CCWGG 2 cut(s) 20, 621
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 6 cut(s) 211, 220, 306, 370, 386, 1009
NciI CCSGG 3 cut(s) 77, 359, 969
NdeII GATC 6 cut(s) 68, 112, 240, 261, 586, 949
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 2 cut(s) 563, 640
NlaIV GGNNCC 8 cut(s) 24, 42, 242, 252, 310, 322, 726, 951
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 781
PcsI WCGNNNNNNNCGW 6 cut(s) 108, 156, 183, 282, 736, 1165
PctI GAATGC 2 cut(s) 772, 1152
PdmI GAANNNNTTC 2 cut(s) 152, 702
PfeI GAWTC 3 cut(s) 196, 340, 858
PfoI TCCNGGA 2 cut(s) 18, 967
PkrI GCNGC 8 cut(s) 57, 125, 216, 255, 429, 456, 673, 1114
PleI GAGTC 2 cut(s) 101, 434
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
PpsI GAGTC 2 cut(s) 101, 434
Ppu21I YACGTR 2 cut(s) 334, 596
Psp124BI GAGCTC 1 cut(s) 873
Psp1406I AACGTT 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 18, 619
PspCI CACGTG 1 cut(s) 596
PspGI CCWGG 2 cut(s) 18, 619
PspN4I GGNNCC 8 cut(s) 24, 42, 242, 252, 310, 322, 726, 951
PspPI GGNCC 5 cut(s) 16, 22, 321, 614, 725
PsuI RGATCY 4 cut(s) 68, 240, 586, 949
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 873
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 354, 912
SatI GCNGC 8 cut(s) 56, 124, 215, 254, 428, 455, 672, 1113
Sau3AI GATC 6 cut(s) 68, 112, 240, 261, 586, 949
Sau96I GGNCC 5 cut(s) 16, 22, 321, 614, 725
SchI GAGTC 2 cut(s) 101, 434
ScrFI CCNGG 5 cut(s) 20, 77, 359, 621, 969
SduI GDGCHC 3 cut(s) 311, 350, 873
SfaNI GCATC 6 cut(s) 14, 201, 373, 494, 790, 814
SfcI CTRYAG 2 cut(s) 118, 487
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 5 cut(s) 16, 22, 321, 614, 725
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 3 cut(s) 128, 275, 1057
SmoI CTYRAG 3 cut(s) 128, 275, 1057
Sse9I AATT 4 cut(s) 325, 698, 992, 1241
SsiI CCGC 8 cut(s) 124, 217, 238, 254, 397, 428, 437, 751
SspMI CTAG 1 cut(s) 641
SstI GAGCTC 1 cut(s) 873
StyD4I CCNGG 5 cut(s) 18, 75, 357, 619, 967
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 3 cut(s) 491, 904, 983
TaiI ACGT 5 cut(s) 180, 336, 483, 598, 912
TaqI TCGA 3 cut(s) 159, 276, 285
TasI AATT 4 cut(s) 325, 698, 992, 1241
TauI GCSGC 3 cut(s) 126, 256, 430
TfiI GAWTC 3 cut(s) 196, 340, 858
Tru1I TTAA 2 cut(s) 354, 912
Tru9I TTAA 2 cut(s) 354, 912
TscAI CASTG 3 cut(s) 496, 543, 1048
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 5 cut(s) 55, 214, 454, 671, 1112
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 145, 667, 1067
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 496, 543, 1048
VpaK11BI GGWCC 5 cut(s) 16, 22, 321, 614, 725
XagI CCTNNNNNAGG 1 cut(s) 758
XapI RAATTY 3 cut(s) 698, 992, 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 2 cut(s) 285, 1071
XmnI GAANNNNTTC 2 cut(s) 152, 702
XspI CTAG 1 cut(s) 641
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.