RchiOBHm_Chr4g0421931

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000103
Physical Location & Seq
Forward (+)
47621724 .. 47622164
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39154

Sequence Viewer

Length: 441 bp
ATGTTTGTTTCTCTATCCAGATTTGACTCACTTTTAGAGCTATACAATTGTTTGCTAAAACCCCCTGTGACGTTCAACGGCTTCCCGAGACTGAAGAGCCTCGAAACTCAAAATGTTACTGTGGCGCAAGGTGTGTTGGAAAAGGTGATCATTTGCTGTCCTCTACTTGAGAGATTGACTCTATGTGACTTAAGGAGTATCACCCATCTCAAAATTGACGCACCAAATCGTCAATTCCTTAATGTTGGAGGTGGTTTTCAGAGTTTTAAACTTAAGAATACCCCAAATCTTGTAGGTATGGAAGTAACAGGCTTCCATGGTGTGAAGGCCGAAGTAGACTTCCTCAGAGTTCAGCTATTAAGCTCCCCTCTTCAAGAACTAGAAATTTCAGTAAGTTGTATTCTATTGAAGCATGCTCTGTGTCCTTATATATATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

8.57

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 98 1.1e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 12 - 104 9.2e-07 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 113
AflII CTTAAG 2 cut(s) 190, 272
AgsI TTSAA 3 cut(s) 76, 374, 409
AluBI AGCT 3 cut(s) 40, 355, 363
AluI AGCT 3 cut(s) 40, 355, 363
Alw26I GTCTC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 384
AspLEI GCGC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 157, 193
AvaI CYCGRG 1 cut(s) 85
BccI CCATC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 94
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 380
BfrI CTTAAG 2 cut(s) 190, 272
BmeT110I CYCGRG 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 358
BshFI GGCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 316
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 89
BspTI CTTAAG 2 cut(s) 190, 272
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 89, 375
BstAFI CTTAAG 2 cut(s) 190, 272
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 127
CseI GACGC 1 cut(s) 227
CviAII CATG 2 cut(s) 317, 413
CviJI RGCY 7 cut(s) 40, 81, 99, 312, 329, 355, 363
CviKI_1 RGCY 7 cut(s) 40, 81, 99, 312, 329, 355, 363
DdeI CTNAG 1 cut(s) 344
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 89, 375
EarI CTCTTC 2 cut(s) 89, 375
Eco130I CCWWGG 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 2 cut(s) 320, 416
FaiI YATR 9 cut(s) 43, 184, 299, 318, 414, 429, 431, 433, 435
FatI CATG 2 cut(s) 316, 412
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 336
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 329
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 320, 416
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 2 cut(s) 26, 178
HphI GGTGA 2 cut(s) 157, 193
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 261, 347
Hpy188III TCNNGA 3 cut(s) 18, 85, 374
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 2 cut(s) 320, 416
HspAI GCGC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 3 cut(s) 31, 78, 294
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 4 cut(s) 67, 115, 185, 304
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 106, 362
MfeI CAATTG 1 cut(s) 46
MluCI AATT 4 cut(s) 46, 213, 233, 384
MlyI GAGTC 2 cut(s) 20, 172
MmeI TCCRAC 2 cut(s) 117, 226
MnlI CCTC 5 cut(s) 110, 171, 242, 353, 378
MseI TTAA 5 cut(s) 191, 240, 267, 273, 359
MspCI CTTAAG 2 cut(s) 190, 272
MunI CAATTG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 316
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 320, 416
NmuCI GTSAC 2 cut(s) 67, 185
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 89
PleI GAGTC 2 cut(s) 20, 172
PpsI GAGTC 2 cut(s) 20, 172
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 5 cut(s) 191, 240, 267, 273, 359
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 2 cut(s) 20, 172
SetI ASST 8 cut(s) 42, 74, 133, 147, 253, 298, 357, 365
SmlI CTYRAG 3 cut(s) 167, 190, 272
SmoI CTYRAG 3 cut(s) 167, 190, 272
SphI GCATGC 1 cut(s) 416
Sse9I AATT 4 cut(s) 46, 213, 233, 384
SspMI CTAG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 102
TasI AATT 4 cut(s) 46, 213, 233, 384
Tru1I TTAA 5 cut(s) 191, 240, 267, 273, 359
Tru9I TTAA 5 cut(s) 191, 240, 267, 273, 359
TseFI GTSAC 2 cut(s) 67, 185
Tsp45I GTSAC 2 cut(s) 67, 185
Vha464I CTTAAG 2 cut(s) 190, 272
XapI RAATTY 1 cut(s) 384
XceI RCATGY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.