Rmu_sc0004703.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004703.1
OG0000103
Physical Location & Seq
Reverse (-)
1 .. 1075
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004703.1_g000001.1.cds

Sequence Viewer

Length: 831 bp
atgcaaagaggttcaccaaagtcctgtttgaaaatggatattgagcttgacaaactcagtaacttaccaagggatgttacggaaaagattttgtcaattttgccaataaaggaggcagtgaggactagtatattatcgagcgagtggaggtacaaatgggctatggttccagatcttgtgtttgatgaactgggtttcctaggagtactttataagcatgacaaattagtgaaaatggttgatcatgtgctcttccttcacattggtccaataaacaaggtcaagctttctcatacaggtcttaagggcacagcagatattgatagatggattctttatctatcaataaattctatgaaagagttcatatttaagttttgcaaaaagcctgaatacaagatgccttcatgtttgttttcctgtcaagatttggttcatttggaattgtgcaattgtttgctaaaacctccgcgcacattcaagggcttcaagaatttgaagaaacttgaaattgagagtgttaccctgacccaagatgagtttgaaaatctaattgtttgttgtcctctgctgaaatatttgaccatgatagattgtcgtggtttcaccaagctcaagattgatgcaccaaatctccaaatctttttccttctaggtgcttttgaggatcttggttttcagaacaccaaaaagcttacaactattgccatttatttaacagctaatggtgaccaaagaagacagaaacctggcagttctagcaatttgctcaagctttttgatcagtgtgcttatgttcaaactgcttatattcttggttactttttaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

277

Amino Acids

31.91

Weight (kDa)

9.03

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccII CGCG 1 cut(s) 472
AciI CCGC 1 cut(s) 470
AclWI GGATC 1 cut(s) 675
AcsI RAATTY 2 cut(s) 349, 493
AfaI GTAC 2 cut(s) 152, 207
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 7 cut(s) 31, 481, 490, 499, 509, 545, 800
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 6 cut(s) 46, 286, 613, 694, 722, 775
AluI AGCT 6 cut(s) 46, 286, 613, 694, 722, 775
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 1 cut(s) 675
ApoI RAATTY 2 cut(s) 349, 493
Asp700I GAANNNNTTC 1 cut(s) 362
AspA2I CCTAGG 1 cut(s) 199
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 3 cut(s) 6, 598, 740
AvaII GGWCC 1 cut(s) 266
AvrII CCTAGG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 745
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 750
BclI TGATCA 2 cut(s) 241, 781
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 4 cut(s) 126, 200, 653, 759
BfrI CTTAAG 1 cut(s) 302
BglII AGATCT 1 cut(s) 172
BlnI CCTAGG 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 750
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 390, 613
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 745
BpuEI CTTGAG 2 cut(s) 599, 755
BsaJI CCNNGG 2 cut(s) 68, 199
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 68, 199
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 252, 311
Bsp143I GATC 4 cut(s) 172, 241, 667, 781
BspACI CCGC 1 cut(s) 470
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 675
BspQI GCTCTTC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 302
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 68, 199
BssMI GATC 4 cut(s) 172, 241, 667, 781
BssT1I CCWWGG 2 cut(s) 68, 199
Bst2UI CCWGG 1 cut(s) 750
Bst6I CTCTTC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 4 cut(s) 175, 244, 670, 784
BstMBI GATC 4 cut(s) 172, 241, 667, 781
BstMWI GCNNNNNNNGC 1 cut(s) 759
BstNI CCWGG 1 cut(s) 750
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 748
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 745
BstX2I RGATCY 2 cut(s) 172, 667
BstYI RGATCY 2 cut(s) 172, 667
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 791
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 151, 206
CviAII CATG 4 cut(s) 218, 245, 408, 586
CviJI RGCY 9 cut(s) 46, 161, 286, 388, 486, 613, 694, 722, 775
CviKI_1 RGCY 9 cut(s) 46, 161, 286, 388, 486, 613, 694, 722, 775
CviQI GTAC 2 cut(s) 151, 206
DdeI CTNAG 1 cut(s) 56
DpnI GATC 4 cut(s) 174, 243, 669, 783
DpnII GATC 4 cut(s) 172, 241, 667, 781
DraI TTTAAA 1 cut(s) 828
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 68, 199
Eco47I GGWCC 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 68, 199
ErhI CCWWGG 2 cut(s) 68, 199
FaeI CATG 4 cut(s) 221, 248, 411, 589
FatI CATG 4 cut(s) 217, 244, 407, 585
FbaI TGATCA 2 cut(s) 241, 781
FokI GGATG 1 cut(s) 86
FspBI CTAG 4 cut(s) 126, 200, 653, 759
GlaI GCGC 1 cut(s) 473
HhaI GCGC 1 cut(s) 474
Hin1II CATG 4 cut(s) 221, 248, 411, 589
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HindIII AAGCTT 3 cut(s) 284, 692, 773
HinfI GANTC 1 cut(s) 331
HphI GGTGA 3 cut(s) 6, 598, 740
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 681
Hpy188III TCNNGA 4 cut(s) 170, 425, 490, 616
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 266, 414, 659
HpyCH4V TGCA 4 cut(s) 4, 381, 450, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 759
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 4 cut(s) 221, 248, 411, 589
HspAI GCGC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 241, 781
Kzo9I GATC 4 cut(s) 172, 241, 667, 781
LguI GCTCTTC 1 cut(s) 257
LpnPI CCDG 9 cut(s) 37, 176, 183, 282, 402, 433, 539, 735, 762
LweI GCATC 2 cut(s) 390, 613
MaeI CTAG 4 cut(s) 126, 200, 653, 759
MaeIII GTNAC 5 cut(s) 59, 76, 520, 728, 818
MalI GATC 4 cut(s) 174, 243, 669, 783
MboI GATC 4 cut(s) 172, 241, 667, 781
MboII GAAGA 3 cut(s) 244, 511, 750
MfeI CAATTG 1 cut(s) 451
MflI RGATCY 2 cut(s) 172, 667
MhlI GDGCHC 2 cut(s) 252, 311
MluCI AATT 9 cut(s) 96, 224, 349, 443, 451, 493, 510, 552, 763
MnlI CCTC 6 cut(s) 106, 114, 141, 477, 576, 658
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 4 cut(s) 303, 372, 716, 827
MspCI CTTAAG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 750
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 759
NdeII GATC 4 cut(s) 172, 241, 667, 781
NlaIII CATG 4 cut(s) 221, 248, 411, 589
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 728
PciSI GCTCTTC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 331
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 748
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 2 cut(s) 172, 667
RsaI GTAC 2 cut(s) 152, 207
RsaNI GTAC 2 cut(s) 151, 206
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 4 cut(s) 303, 372, 716, 827
Sau3AI GATC 4 cut(s) 172, 241, 667, 781
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 2 cut(s) 252, 311
SfaNI GCATC 2 cut(s) 390, 613
SinI GGWCC 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 302, 614, 770
SmoI CTYRAG 3 cut(s) 302, 614, 770
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 9 cut(s) 96, 224, 349, 443, 451, 493, 510, 552, 763
SsiI CCGC 1 cut(s) 470
SspI AATATT 1 cut(s) 578
SspMI CTAG 4 cut(s) 126, 200, 653, 759
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 2 cut(s) 68, 199
TaqI TCGA 1 cut(s) 137
TasI AATT 9 cut(s) 96, 224, 349, 443, 451, 493, 510, 552, 763
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 4 cut(s) 303, 372, 716, 827
Tru9I TTAA 4 cut(s) 303, 372, 716, 827
TscAI CASTG 2 cut(s) 123, 791
TseFI GTSAC 1 cut(s) 728
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 5 cut(s) 201, 355, 371, 396, 425
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 123, 791
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 2 cut(s) 349, 493
XmaJI CCTAGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 4 cut(s) 126, 200, 653, 759
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.