RchiOBHm_Chr4g0421851

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000103
Physical Location & Seq
Forward (+)
47552994 .. 47553869
876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39147

Sequence Viewer

Length: 876 bp
ATGTGTCAGAAAGCTGGAAAAACAGCCAATTCTGCTTCGAAAAAGAAGAGGGATGAGTTGGACAAAATAAGCAACTTACCTAGTGGTGTTACACAACAAATCTTGTCATTTTTGCCCATCAGGGAGGCAGTGAGGACAAGTATTTTATCAAGCAACTGGAGGCACAAATGGGCTATGGTTCGGCATCTTGTGTTCGATGATCAGTGTGTTTCGGATATGATGAAAGGTGGTACAAAGAGGACGAAAACATTTGAGAATATTGTTGATCATGTTCTCTTACTTCATTCCGGTTCCATAGACACTTTCAAGCTTTCCAGTCGAATTTATCTTATTGAAAGCAGTTGTATAGATAGATGGCTTCTTCATCTATTAAGAAACTATAATTCTATCAAAGAGTTCGTACTGAAACAAGAAGGGAATATGTACAAGATCTCTTCATGTTTGTTTCTCTATCCAGATTTGACTCACTTAGAGCTATACAATTGTTTGCTAAAACCCCCTGTGATGTTCAAAGGCTTCCCAAGATTGAAGAGCCTCGAAATTCAGAAAGTTACTGTGGCGCAAGATGTGTTGGAAAAGGTGATCATTTGCTGTCCTCTACTTGAGAGAATGACTCTATGTGACTTAAGGAATATCACCCATCTCAACATTGATGCACCAAATCTTCAATTCCTTAATGTTGGAGGTGGTTTTCAGAGTTTTAAACTTAAGAATACCCCAAATCTTGTTGGTATGAAAGTAACAGGCTTCCGTGGTTTGAAGGCTGAAGTAGACTTCCTCAGAGTTCAGCTATTAAGCTCCCCTCTTCAAGAACTAGAAATTTCAGTAAGTGGTATTCTATTGAAGCATGCTCTGTGTCCTTATATATATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

9.36

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 61 1.9e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 94 - 249 7.9e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 117 - 244 5.1e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AcsI RAATTY 3 cut(s) 321, 540, 819
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 3 cut(s) 232, 402, 425
AflII CTTAAG 2 cut(s) 625, 707
AgsI TTSAA 8 cut(s) 307, 335, 511, 529, 668, 760, 809, 844
AluBI AGCT 5 cut(s) 14, 310, 475, 790, 798
AluI AGCT 5 cut(s) 14, 310, 475, 790, 798
ApoI RAATTY 3 cut(s) 321, 540, 819
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 592, 628
AsuII TTCGAA 1 cut(s) 38
BccI CCATC 3 cut(s) 125, 348, 648
BclI TGATCA 3 cut(s) 199, 265, 582
BfaI CTAG 2 cut(s) 81, 815
BfrI CTTAAG 2 cut(s) 625, 707
BglII AGATCT 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 292
BmsI GCATC 2 cut(s) 193, 643
BplI GAGNNNNNCTC 2 cut(s) 598, 630
BpmI CTGGAG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 161, 315
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 793
BseNI ACTGG 2 cut(s) 161, 315
BsiSI CCGG 1 cut(s) 288
Bsp119I TTCGAA 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 4 cut(s) 199, 265, 429, 582
BspCNI CTCAG 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 38
BspTI CTTAAG 2 cut(s) 625, 707
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 2 cut(s) 161, 315
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 4 cut(s) 199, 265, 429, 582
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 4 cut(s) 41, 439, 524, 810
BstAFI CTTAAG 2 cut(s) 625, 707
BstAUI TGTACA 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 2 cut(s) 469, 779
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 4 cut(s) 202, 268, 432, 585
BstMBI GATC 4 cut(s) 199, 265, 429, 582
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 851
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 209
Cac8I GCNNGC 1 cut(s) 849
CfoI GCGC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 231, 401, 424
CviAII CATG 3 cut(s) 269, 438, 848
CviQI GTAC 3 cut(s) 231, 401, 424
DdeI CTNAG 2 cut(s) 469, 779
DpnI GATC 4 cut(s) 201, 267, 431, 584
DpnII GATC 4 cut(s) 199, 265, 429, 582
DraI TTTAAA 1 cut(s) 703
Eam1104I CTCTTC 4 cut(s) 41, 439, 524, 810
EarI CTCTTC 4 cut(s) 41, 439, 524, 810
Eco57I CTGAAG 1 cut(s) 786
FaeI CATG 3 cut(s) 272, 441, 851
FatI CATG 3 cut(s) 268, 437, 847
FbaI TGATCA 3 cut(s) 199, 265, 582
FblI GTMKAC 1 cut(s) 771
FokI GGATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 81, 815
GlaI GCGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 178
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 562
Hin1II CATG 3 cut(s) 272, 441, 851
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 463, 613
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 592, 628
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 5 cut(s) 9, 214, 546, 696, 782
Hpy188III TCNNGA 2 cut(s) 455, 809
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 2 cut(s) 407, 754
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 469, 779
Hsp92II CATG 3 cut(s) 272, 441, 851
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 3 cut(s) 199, 265, 582
Kzo9I GATC 4 cut(s) 199, 265, 429, 582
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 1 cut(s) 803
LpnPI CCDG 7 cut(s) 106, 142, 301, 328, 468, 513, 729
LweI GCATC 2 cut(s) 193, 643
MaeI CTAG 2 cut(s) 81, 815
MaeIII GTNAC 4 cut(s) 88, 550, 620, 739
MalI GATC 4 cut(s) 201, 267, 431, 584
MboI GATC 4 cut(s) 199, 265, 429, 582
MboII GAAGA 6 cut(s) 58, 353, 426, 541, 656, 797
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 1 cut(s) 429
MluCI AATT 7 cut(s) 28, 321, 382, 481, 540, 668, 819
MlyI GAGTC 2 cut(s) 457, 607
MmeI TCCRAC 3 cut(s) 39, 552, 661
MseI TTAA 6 cut(s) 371, 626, 675, 702, 708, 794
MspCI CTTAAG 2 cut(s) 625, 707
MspI CCGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 4 cut(s) 199, 265, 429, 582
NlaIII CATG 3 cut(s) 272, 441, 851
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 1 cut(s) 851
NspV TTCGAA 1 cut(s) 38
PaeI GCATGC 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 524
PleI GAGTC 2 cut(s) 457, 607
PpsI GAGTC 2 cut(s) 457, 607
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 3 cut(s) 232, 402, 425
RsaNI GTAC 3 cut(s) 231, 401, 424
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 6 cut(s) 371, 626, 675, 702, 708, 794
Sau3AI GATC 4 cut(s) 199, 265, 429, 582
SchI GAGTC 2 cut(s) 457, 607
SetI ASST 9 cut(s) 16, 82, 229, 312, 477, 582, 688, 792, 800
SfaNI GCATC 2 cut(s) 193, 643
SfuI TTCGAA 1 cut(s) 38
SmlI CTYRAG 3 cut(s) 602, 625, 707
SmoI CTYRAG 3 cut(s) 602, 625, 707
SphI GCATGC 1 cut(s) 851
Sse9I AATT 7 cut(s) 28, 321, 382, 481, 540, 668, 819
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 81, 815
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 4 cut(s) 38, 195, 319, 537
TasI AATT 7 cut(s) 28, 321, 382, 481, 540, 668, 819
TatI WGTACW 1 cut(s) 423
Tru1I TTAA 6 cut(s) 371, 626, 675, 702, 708, 794
Tru9I TTAA 6 cut(s) 371, 626, 675, 702, 708, 794
TscAI CASTG 2 cut(s) 135, 209
TseFI GTSAC 1 cut(s) 620
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 5 cut(s) 236, 272, 353, 426, 749
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 2 cut(s) 135, 209
Vha464I CTTAAG 2 cut(s) 625, 707
XapI RAATTY 3 cut(s) 321, 540, 819
XceI RCATGY 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 771
XspI CTAG 2 cut(s) 81, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.