Rw6G004390

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000103
Physical Location & Seq
Reverse (-)
7002761 .. 7003523
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004390.1

Sequence Viewer

Length: 648 bp
ATGATACTTGACAATTTGGAAGGGGACATCTACAACATTCCATCATGTTTGTTTTCTTTTAAAGATATCGTTCATTTAGAGTTATTCAGGTGTTTGCTAAACCCTCCTTCCACATTCAAAGGCTTTGGCAGCTTGAAGAGCCTTGATCTTTGCTCTGTTACTTTGGCCCAAGATGTGTTTGACAACTTGATTGGTTGCAGTCCTCTGCTTGAGATATTGAAATTGGAAGAATGTGATGGTTTCACCAATCTCAAGATTGATGCACCGAAGCTCTGGTTTATTTACATAGTAGGGGACTTTGAAGATTTTAACCTCGTGGATTCCTCAAATCTTGTGGATGCTTTCTTTGATTTGCAGGTCATTGTTGATCAAAGAGGGAATTGTAGTAGTTTTGGGAATTTGCTCAAGTTTTTTGATCACCAGCTGCCTCATATTCGAAGGCTCACAATAACGAGGAACTTTCTAAAATACTTGTCTATTGGTGCCTTGCCAGAGAAGCTCCCTAAACCATGCCAATATCTCAATTTTCTTTCTTTAGACATGAACTTTGACAATCCGGATCAAATTTCAACTGTCTTATGTCTTCTGAGAAGCTGTCCTGCTCTACAAGAACTGAAAATTTTGGTTAGTTTTTTTCTGCCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

215

Amino Acids

24.46

Weight (kDa)

4.71

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 10 - 207 3.6e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 12 - 207 4.2e-16 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 482
AccIII TCCGGA 1 cut(s) 556
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 3 cut(s) 397, 564, 618
AgsI TTSAA 5 cut(s) 118, 136, 220, 302, 570
AluBI AGCT 5 cut(s) 132, 271, 424, 499, 594
AluI AGCT 5 cut(s) 132, 271, 424, 499, 594
AlwI GGATC 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 129, 424
ApoI RAATTY 3 cut(s) 397, 564, 618
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 235, 410
AsuII TTCGAA 1 cut(s) 436
BanI GGYRCC 1 cut(s) 482
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 141, 411
BccI CCATC 2 cut(s) 49, 230
BclI TGATCA 2 cut(s) 367, 415
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 130, 425
BlsI GCNGC 2 cut(s) 131, 426
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 484
BmsI GCATC 2 cut(s) 250, 328
BpiI GAAGAC 1 cut(s) 575
Bpu14I TTCGAA 1 cut(s) 436
BpuEI CTTGAG 3 cut(s) 230, 236, 389
BsaWI WCCGGW 1 cut(s) 556
BseAI TCCGGA 1 cut(s) 556
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 141, 411
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 482
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 2 cut(s) 38, 308
BsmFI GGGAC 2 cut(s) 38, 308
BsnI GGCC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 4 cut(s) 145, 367, 415, 559
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 579
BspEI TCCGGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 567
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 482
BssMI GATC 4 cut(s) 145, 367, 415, 559
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 4 cut(s) 148, 370, 418, 562
BstMBI GATC 4 cut(s) 145, 367, 415, 559
BstMWI GCNNNNNNNGC 3 cut(s) 129, 138, 496
BstV1I GCAGC 2 cut(s) 141, 411
BstV2I GAAGAC 1 cut(s) 575
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 3 cut(s) 45, 510, 541
CviJI RGCY 9 cut(s) 123, 132, 141, 167, 271, 424, 442, 499, 594
CviKI_1 RGCY 9 cut(s) 123, 132, 141, 167, 271, 424, 442, 499, 594
DdeI CTNAG 1 cut(s) 587
DpnI GATC 4 cut(s) 147, 369, 417, 561
DpnII GATC 4 cut(s) 145, 367, 415, 559
DraI TTTAAA 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 67
EcoRV GATATC 1 cut(s) 67
FaeI CATG 3 cut(s) 48, 513, 544
FaiI YATR 6 cut(s) 46, 287, 432, 511, 542, 580
FaqI GGGAC 2 cut(s) 38, 308
FatI CATG 3 cut(s) 44, 509, 540
FbaI TGATCA 2 cut(s) 367, 415
Fnu4HI GCNGC 2 cut(s) 130, 425
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 130, 425
GluI GCNGC 2 cut(s) 130, 425
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 557
Hin1II CATG 3 cut(s) 48, 513, 544
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 557
HphI GGTGA 2 cut(s) 235, 410
Hpy188I TCNGA 1 cut(s) 588
Hpy188III TCNNGA 2 cut(s) 253, 557
HpyAV CCTTC 3 cut(s) 14, 117, 432
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 3 cut(s) 198, 263, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 138, 496
HpyF3I CTNAG 1 cut(s) 587
Hsp92II CATG 3 cut(s) 48, 513, 544
Kpn2I TCCGGA 1 cut(s) 556
Ksp22I TGATCA 2 cut(s) 367, 415
Kzo9I GATC 4 cut(s) 145, 367, 415, 559
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 504
LpnPI CCDG 7 cut(s) 73, 259, 341, 434, 504, 570, 612
Lsp1109I GCAGC 2 cut(s) 141, 411
LweI GCATC 2 cut(s) 250, 328
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 147, 369, 417, 561
MboI GATC 4 cut(s) 145, 367, 415, 559
MboII GAAGA 4 cut(s) 148, 239, 314, 575
MluCI AATT 7 cut(s) 13, 221, 379, 397, 523, 564, 618
MnlI CCTC 7 cut(s) 114, 213, 323, 334, 368, 438, 447
MroI TCCGGA 1 cut(s) 556
MseI TTAA 3 cut(s) 60, 309, 646
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 129, 138, 496
NdeII GATC 4 cut(s) 145, 367, 415, 559
NlaIII CATG 3 cut(s) 48, 513, 544
NlaIV GGNNCC 1 cut(s) 484
NspV TTCGAA 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 2 cut(s) 131, 426
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 60, 309, 646
SatI GCNGC 2 cut(s) 130, 425
Sau3AI GATC 4 cut(s) 145, 367, 415, 559
Sau96I GGNCC 1 cut(s) 166
SetI ASST 8 cut(s) 92, 134, 273, 315, 360, 426, 501, 596
SfaNI GCATC 2 cut(s) 250, 328
SfuI TTCGAA 1 cut(s) 436
SmlI CTYRAG 3 cut(s) 209, 251, 404
SmoI CTYRAG 3 cut(s) 209, 251, 404
Sse9I AATT 7 cut(s) 13, 221, 379, 397, 523, 564, 618
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 436
TasI AATT 7 cut(s) 13, 221, 379, 397, 523, 564, 618
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 3 cut(s) 60, 309, 646
Tru9I TTAA 3 cut(s) 60, 309, 646
TseI GCWGC 2 cut(s) 129, 424
TspDTI ATGAA 2 cut(s) 62, 557
XapI RAATTY 3 cut(s) 397, 564, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.