Rorug05G0533200

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000103
Physical Location & Seq
Reverse (-)
72113994 .. 72116725
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0533200.1

Sequence Viewer

Length: 1887 bp
ATGAAGTCCTGTCCCTTTTCAGTAGTTTCTTTCGTTTTTGTCATTGCCATTCTTCTTCCCCTGGTTTTCTCTGACCTGAATTCTGATCAGCAAGCCCTTCTTGGCTTTGCTAATGCTGTTCCCCATCGCCGTAACCTTGCTTGGGACCCTGCTACCTCAGTCTGCTCCTGGTTTGGCATCAGTTGCCATCCAAATGGAACTCGGGTGACTTCTGTCCGTCTCCCAGGAATTGGACTCATAGGTTCTATCCCATCAAACACCCTGGGCAAGCTTGATGCCCTCAAGGCTCTCAGCCTTCGATCCAACCGCCTCAGTGGTAGCCTTCCATCCGATATTACCTCCCTTCCAATGCTCCAGTACCTATATGTCCAGCGGAACAACTTCTCTGGTGATATTCCTGCTTCCTTTCCACTTCAACTCAATGTGTTGGATCTATCATTTAATTCTTTCACAGGCAACATTCCGCAAATGATACGTAACTTAACTCAACTCACAACATTGAACCTCCAGAACAACTCCCTTTCTGGACCGATACCTGATCTCAACCTACCTAAGCTAAAGCGTTTGAATGTAAGCTACAACCATCTTAATGGCTCTATCCCATCATCCCTTGAAGGGTTCCCTAATTCATCCTTTGTGGGAAACTCGTTTTTATGTGGAGGACCTCTTAAAGCTTGCACCCTCCCTCCACCTCCTACCTCCTTTTCTCCGCCAGCAGCACCTCCTCATAAAAGCTCCAAACTGAAGCTGAAAATGGGAGTCATCATTGCTATAGCAGCTGGAGGGTCTGTTCTCTTGTTGCTTTTAGGCCTCATTGTAGTTCTCTGCTGTTTAAAGAAAAAAGACAGTGGAGGAACTAATGTATTGAAAGGGAAGGCTCCTACTGGTGGGAGGAGTGAGAAGCCCAGAGAGGAGTTTGGCAGTGGGGTGCAAGAACCTGAGAAGAACAAACTAGTATTCTTTGAAGGTTGTTCATACAATTTTGATCTCGATGATTTGTTGAGAGCTTCAGCTGAAGTGTTGGGAAAAGGGAGTTATGGTACAGCGTACAAAGCCGTCCTAGAGGAGGCAACAACAGTTGTAGTCAAAAGGCTGAAGGAAGTGGTCGTTGGGAAGAAGGATTTTGAACAGCAAATGGAGATTGTGGGAAGAGTTGGACAACACACAAATGTTGTACCACTCCGTGCTTATTATTACTCAAAAGACGAGAAGCTTCTGGTGTATGATTATATCTCTAATGGCAGCTTATCAGCTTTTTTGCATGGAAACAGGGGAGGAGGAAGAACTCCATTAGACTGGGATTCAAGAATAAAAATTTCCCTTGGAACTGCGAGGGGAATCGCCCACATCCATTCAGTGGGTGGTCCAAAGTTCACTCATGGAAATATTAAGGCCACAAATGTACTTCTCACCCAAGATCTTGATGGGTGCATCTCTGATGTTGGCTTGACTCCTCTTATGAATGTTCCTGCCACTGCTCGGAGTGCAGGATATCGTGCTCCAGAGGTAATTGAAACTCGTAAGCACTCTCACAAATCAGATGTGTATAGCTTCGGCGTCGTCCTCCTAGAGATGCTGACTGGAAAAGCTCCTCTCCAGTCACCAGGGCGTGATGACATGGTTGATCTCCCAAGGTGGGTCCAGTCTGTGGTCAGGGAGGAATGGACTGCAGAGGTTTTCGATGTTGAGTTGATGAGATATCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCAATGGCTTGTGTGGCAAAGGTGCCGGACATGCGTCCTAACATGGAAGAAGTTGTTAGAATGATTGAAGACATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGAAAATAAATCAAATGTGCAGACTCCTGACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

628

Amino Acids

68.43

Weight (kDa)

8.52

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 62 7.2e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 80 - 128 4e-06 Leucine rich repeat
LRR_14 PF23598 83 - 196 3.2e-08 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 339 - 601 9.2e-36 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 339 - 600 1.6e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1762
AccB7I CCANNNNNTGG 3 cut(s) 230, 1357, 1648
AciI CCGC 4 cut(s) 307, 373, 464, 710
AclWI GGATC 2 cut(s) 294, 438
AcoI YGGCCR 1 cut(s) 1838
AcsI RAATTY 2 cut(s) 79, 1314
AcuI CTGAAG 5 cut(s) 764, 993, 1035, 1115, 1869
AcyI GRCGYC 1 cut(s) 1557
AdeI CACNNNGTG 1 cut(s) 1184
AfaI GTAC 5 cut(s) 359, 1042, 1049, 1176, 1404
AfiI CCNNNNNNNGG 9 cut(s) 142, 230, 615, 887, 1066, 1357, 1479, 1636, 1648
AhlI ACTAGT 1 cut(s) 952
AjnI CCWGG 5 cut(s) 60, 167, 223, 261, 1603
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AloI GAACNNNNNNTCC 2 cut(s) 774, 806
Alw21I GWGCWC 1 cut(s) 1501
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 294, 438
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 3 cut(s) 808, 1392, 1838
ApeKI GCWGC 3 cut(s) 716, 776, 1242
ApoI RAATTY 2 cut(s) 79, 1314
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 5 cut(s) 145, 527, 662, 1364, 1639
AsuHPI GGTGA 4 cut(s) 217, 401, 1402, 1593
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 5 cut(s) 145, 527, 662, 1364, 1639
BanI GGYRCC 1 cut(s) 1762
BbsI GAAGAC 1 cut(s) 1815
Bbv12I GWGCWC 1 cut(s) 1501
BbvI GCAGC 3 cut(s) 728, 788, 1254
BccI CCATC 8 cut(s) 132, 195, 259, 334, 591, 610, 1418, 1849
BceAI ACGGC 2 cut(s) 114, 1040
BciT130I CCWGG 5 cut(s) 62, 169, 225, 263, 1605
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 952
BfaI CTAG 3 cut(s) 953, 1061, 1568
BfmI CTRYAG 2 cut(s) 771, 1668
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 1417
BisI GCNGC 3 cut(s) 717, 777, 1243
BlsI GCNGC 3 cut(s) 718, 778, 1244
Bme1390I CCNGG 5 cut(s) 62, 169, 225, 263, 1605
Bme18I GGWCC 5 cut(s) 145, 527, 662, 1364, 1639
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 5 cut(s) 145, 527, 662, 1364, 1639
BmiI GGNNCC 6 cut(s) 146, 147, 620, 879, 1640, 1764
BmrFI CCNGG 5 cut(s) 62, 169, 225, 263, 1605
BmrI ACTGGG 1 cut(s) 1306
BmsI GCATC 4 cut(s) 186, 265, 1440, 1563
BmuI ACTGGG 1 cut(s) 1306
BoxI GACNNNNGTC 2 cut(s) 212, 1773
BpiI GAAGAC 1 cut(s) 1815
BpmI CTGGAG 5 cut(s) 338, 491, 801, 1485, 1580
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 1557
BsaJI CCNNGG 7 cut(s) 60, 223, 261, 262, 1321, 1604, 1631
BsaXI ACNNNNNCTCC 6 cut(s) 670, 700, 774, 804, 1024, 1054
Bsc4I CCNNNNNNNGG 9 cut(s) 142, 230, 615, 887, 1066, 1357, 1479, 1636, 1648
Bse118I RCCGGY 1 cut(s) 1836
Bse1I ACTGG 6 cut(s) 355, 889, 1301, 1585, 1597, 1642
Bse3DI GCAATG 3 cut(s) 42, 765, 1749
BseBI CCWGG 5 cut(s) 62, 169, 225, 263, 1605
BseDI CCNNGG 7 cut(s) 60, 223, 261, 262, 1321, 1604, 1631
BseGI GGATG 6 cut(s) 187, 326, 605, 629, 1347, 1812
BseLI CCNNNNNNNGG 9 cut(s) 142, 230, 615, 887, 1066, 1357, 1479, 1636, 1648
BseMI GCAATG 3 cut(s) 42, 765, 1749
BseMII CTCAG 5 cut(s) 171, 304, 325, 930, 1842
BseNI ACTGG 6 cut(s) 355, 889, 1301, 1585, 1597, 1642
BseRI GAGGAG 7 cut(s) 714, 907, 926, 1079, 1290, 1443, 1581
BseXI GCAGC 3 cut(s) 728, 788, 1254
BsgI GTGCAG 1 cut(s) 1506
BshFI GGCC 3 cut(s) 810, 1394, 1840
BshNI GGYRCC 1 cut(s) 1762
BsiHKAI GWGCWC 1 cut(s) 1501
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 3 cut(s) 1766, 1816, 1837
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 9 cut(s) 142, 230, 615, 887, 1066, 1357, 1479, 1636, 1648
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 3 cut(s) 810, 1394, 1840
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 1501
Bsp143I GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
BspACI CCGC 4 cut(s) 307, 373, 464, 710
BspANI GGCC 3 cut(s) 810, 1394, 1840
BspCNI CTCAG 5 cut(s) 170, 303, 324, 931, 1841
BspLI GGNNCC 6 cut(s) 146, 147, 620, 879, 1640, 1764
BspMAI CTGCAG 1 cut(s) 1672
BspPI GGATC 2 cut(s) 294, 438
BspT107I GGYRCC 1 cut(s) 1762
BsrDI GCAATG 3 cut(s) 42, 765, 1749
BsrFI RCCGGY 1 cut(s) 1836
BsrI ACTGG 6 cut(s) 355, 889, 1301, 1585, 1597, 1642
BssAI RCCGGY 1 cut(s) 1836
BssECI CCNNGG 7 cut(s) 60, 223, 261, 262, 1321, 1604, 1631
BssMI GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
BssNI GRCGYC 1 cut(s) 1557
BssT1I CCWWGG 2 cut(s) 1321, 1631
Bst2UI CCWGG 5 cut(s) 62, 169, 225, 263, 1605
Bst4CI ACNGT 2 cut(s) 848, 1078
Bst6I CTCTTC 1 cut(s) 1144
BstACI GRCGYC 1 cut(s) 1557
BstAPI GCANNNNNTGC 2 cut(s) 183, 1732
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 4 cut(s) 93, 269, 676, 714
BstDEI CTNAG 6 cut(s) 157, 290, 311, 552, 939, 1828
BstENI CCTNNNNNAGG 1 cut(s) 1064
BstF5I GGATG 6 cut(s) 187, 326, 605, 629, 1347, 1812
BstKTI GATC 7 cut(s) 88, 302, 433, 541, 988, 1420, 1627
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
BstMWI GCNNNNNNNGC 8 cut(s) 183, 284, 776, 1052, 1484, 1732, 1754, 1771
BstNI CCWGG 5 cut(s) 62, 169, 225, 263, 1605
BstNSI RCATGY 1 cut(s) 1774
BstPAI GACNNNNGTC 2 cut(s) 212, 1773
BstSCI CCNGG 5 cut(s) 60, 167, 223, 261, 1603
BstSFI CTRYAG 2 cut(s) 771, 1668
BstSNI TACGTA 1 cut(s) 476
BstV1I GCAGC 3 cut(s) 728, 788, 1254
BstV2I GAAGAC 1 cut(s) 1815
BstX2I RGATCY 2 cut(s) 430, 1417
BstXI CCANNNNNNTGG 3 cut(s) 194, 590, 1296
BstYI RGATCY 2 cut(s) 430, 1417
BsuRI GGCC 3 cut(s) 810, 1394, 1840
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 6 cut(s) 187, 326, 605, 629, 1347, 1812
BtsI GCAGTG 2 cut(s) 928, 1473
BtsIMutI CAGTG 5 cut(s) 319, 853, 928, 1362, 1473
Cac8I GCNNGC 4 cut(s) 93, 269, 676, 714
Cfr10I RCCGGY 1 cut(s) 1836
Cfr13I GGNCC 5 cut(s) 145, 527, 662, 1364, 1639
CseI GACGC 2 cut(s) 1546, 1763
Csp6I GTAC 5 cut(s) 358, 1041, 1048, 1175, 1403
CviAII CATG 5 cut(s) 1262, 1379, 1618, 1771, 1783
CviQI GTAC 5 cut(s) 358, 1041, 1048, 1175, 1403
DdeI CTNAG 6 cut(s) 157, 290, 311, 552, 939, 1828
DpnI GATC 7 cut(s) 87, 301, 432, 540, 987, 1419, 1626
DpnII GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
DraI TTTAAA 1 cut(s) 834
DraIII CACNNNGTG 1 cut(s) 1184
EaeI YGGCCR 1 cut(s) 1838
Eam1104I CTCTTC 1 cut(s) 1144
EarI CTCTTC 1 cut(s) 1144
EciI GGCGGA 1 cut(s) 699
Eco105I TACGTA 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 1321, 1631
Eco147I AGGCCT 1 cut(s) 810
Eco32I GATATC 2 cut(s) 1493, 1700
Eco47I GGWCC 5 cut(s) 145, 527, 662, 1364, 1639
Eco57I CTGAAG 5 cut(s) 764, 993, 1035, 1115, 1869
Eco88I CYCGRG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 1064
EcoO109I RGGNCCY 2 cut(s) 145, 662
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 5 cut(s) 60, 167, 223, 261, 1603
EcoRV GATATC 2 cut(s) 1493, 1700
EcoT14I CCWWGG 2 cut(s) 1321, 1631
ErhI CCWWGG 2 cut(s) 1321, 1631
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 5 cut(s) 1265, 1382, 1621, 1774, 1786
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 158
FatI CATG 5 cut(s) 1261, 1378, 1617, 1770, 1782
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 717, 777, 1243
FokI GGATG 6 cut(s) 174, 313, 592, 616, 1334, 1799
Fsp4HI GCNGC 3 cut(s) 717, 777, 1243
FspBI CTAG 3 cut(s) 953, 1061, 1568
GluI GCNGC 3 cut(s) 717, 777, 1243
GsuI CTGGAG 5 cut(s) 338, 491, 801, 1485, 1580
HaeIII GGCC 3 cut(s) 810, 1394, 1840
HapII CCGG 3 cut(s) 1766, 1816, 1837
HgaI GACGC 2 cut(s) 1546, 1763
Hin1I GRCGYC 1 cut(s) 1557
Hin1II CATG 5 cut(s) 1265, 1382, 1621, 1774, 1786
HindIII AAGCTT 3 cut(s) 269, 672, 1211
HinfI GANTC 7 cut(s) 234, 759, 1301, 1338, 1450, 1826, 1873
HpaII CCGG 3 cut(s) 1766, 1816, 1837
HphI GGTGA 4 cut(s) 217, 401, 1402, 1593
Hpy166II GTNNAC 1 cut(s) 1374
Hpy188I TCNGA 9 cut(s) 73, 85, 331, 1438, 1482, 1540, 1825, 1831, 1849
Hpy188III TCNNGA 7 cut(s) 508, 525, 989, 1305, 1421, 1502, 1877
Hpy8I GTNNAC 1 cut(s) 1374
Hpy99I CGWCG 1 cut(s) 1562
HpyAV CCTTC 9 cut(s) 107, 305, 332, 353, 608, 868, 959, 1090, 1111
HpyCH4III ACNGT 2 cut(s) 848, 1078
HpyCH4IV ACGT 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 8 cut(s) 183, 284, 776, 1052, 1484, 1732, 1754, 1771
HpyF3I CTNAG 6 cut(s) 157, 290, 311, 552, 939, 1828
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 1 cut(s) 1557
Hsp92II CATG 5 cut(s) 1265, 1382, 1621, 1774, 1786
KflI GGGWCCC 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
LmnI GCTCC 6 cut(s) 170, 357, 740, 883, 1504, 1594
Lsp1109I GCAGC 3 cut(s) 728, 788, 1254
LweI GCATC 4 cut(s) 186, 265, 1440, 1563
MaeI CTAG 3 cut(s) 953, 1061, 1568
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 4 cut(s) 131, 205, 476, 1599
MalI GATC 7 cut(s) 87, 301, 432, 540, 987, 1419, 1626
MboI GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
MflI RGATCY 2 cut(s) 430, 1417
MhlI GDGCHC 1 cut(s) 1501
MluCI AATT 8 cut(s) 79, 228, 442, 625, 979, 1314, 1509, 1737
MlyI GAGTC 5 cut(s) 228, 768, 1444, 1820, 1867
MmeI TCCRAC 3 cut(s) 327, 408, 1135
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 6 cut(s) 441, 482, 588, 669, 833, 1389
MslI CAYNNNNRTG 3 cut(s) 192, 588, 1167
MspA1I CMGCKG 3 cut(s) 373, 779, 1013
MspI CCGG 3 cut(s) 1766, 1816, 1837
MspR9I CCNGG 5 cut(s) 62, 169, 225, 263, 1605
MvaI CCWGG 5 cut(s) 62, 169, 225, 263, 1605
MwoI GCNNNNNNNGC 8 cut(s) 183, 284, 776, 1052, 1484, 1732, 1754, 1771
NdeII GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
NlaIII CATG 5 cut(s) 1265, 1382, 1621, 1774, 1786
NlaIV GGNNCC 6 cut(s) 146, 147, 620, 879, 1640, 1764
NmuCI GTSAC 2 cut(s) 205, 1599
NspI RCATGY 1 cut(s) 1774
PasI CCCWGGG 1 cut(s) 262
PceI AGGCCT 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 1301, 1338
PflMI CCANNNNNTGG 3 cut(s) 230, 1357, 1648
PkrI GCNGC 3 cut(s) 718, 778, 1244
PleI GAGTC 5 cut(s) 228, 767, 1444, 1820, 1867
PpsI GAGTC 5 cut(s) 228, 767, 1444, 1820, 1867
Ppu21I YACGTR 1 cut(s) 476
PpuMI RGGWCCY 2 cut(s) 145, 662
PshAI GACNNNNGTC 2 cut(s) 212, 1773
Psp5II RGGWCCY 2 cut(s) 145, 662
Psp6I CCWGG 5 cut(s) 60, 167, 223, 261, 1603
PspGI CCWGG 5 cut(s) 60, 167, 223, 261, 1603
PspN4I GGNNCC 6 cut(s) 146, 147, 620, 879, 1640, 1764
PspPI GGNCC 5 cut(s) 145, 527, 662, 1364, 1639
PspPPI RGGWCCY 2 cut(s) 145, 662
PstI CTGCAG 1 cut(s) 1672
PsuI RGATCY 2 cut(s) 430, 1417
PvuII CAGCTG 2 cut(s) 779, 1013
RsaI GTAC 5 cut(s) 359, 1042, 1049, 1176, 1404
RsaNI GTAC 5 cut(s) 358, 1041, 1048, 1175, 1403
RseI CAYNNNNRTG 3 cut(s) 192, 588, 1167
SaqAI TTAA 6 cut(s) 441, 482, 588, 669, 833, 1389
SatI GCNGC 3 cut(s) 717, 777, 1243
Sau3AI GATC 7 cut(s) 85, 299, 430, 538, 985, 1417, 1624
Sau96I GGNCC 5 cut(s) 145, 527, 662, 1364, 1639
SchI GAGTC 5 cut(s) 228, 768, 1444, 1820, 1867
ScrFI CCNGG 5 cut(s) 62, 169, 225, 263, 1605
SduI GDGCHC 1 cut(s) 1501
SfaNI GCATC 4 cut(s) 186, 265, 1440, 1563
SfcI CTRYAG 2 cut(s) 771, 1668
SinI GGWCC 5 cut(s) 145, 527, 662, 1364, 1639
SmiMI CAYNNNNRTG 3 cut(s) 192, 588, 1167
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SnaBI TACGTA 1 cut(s) 476
SpeI ACTAGT 1 cut(s) 952
Sse9I AATT 8 cut(s) 79, 228, 442, 625, 979, 1314, 1509, 1737
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 4 cut(s) 307, 373, 464, 710
SspI AATATT 1 cut(s) 1387
SspMI CTAG 3 cut(s) 953, 1061, 1568
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 5 cut(s) 60, 167, 223, 261, 1603
StyI CCWWGG 2 cut(s) 1321, 1631
TaaI ACNGT 2 cut(s) 848, 1078
TaiI ACGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 298, 990, 1680
TaqII GACCGA 1 cut(s) 544
TasI AATT 8 cut(s) 79, 228, 442, 625, 979, 1314, 1509, 1737
TatI WGTACW 1 cut(s) 1402
TfiI GAWTC 2 cut(s) 1301, 1338
Tru1I TTAA 6 cut(s) 441, 482, 588, 669, 833, 1389
Tru9I TTAA 6 cut(s) 441, 482, 588, 669, 833, 1389
TscAI CASTG 5 cut(s) 319, 853, 928, 1362, 1480
TseFI GTSAC 2 cut(s) 205, 1599
TseI GCWGC 3 cut(s) 716, 776, 1242
Tsp45I GTSAC 2 cut(s) 205, 1599
TspDTI ATGAA 4 cut(s) 17, 618, 963, 1475
TspGWI ACGGA 2 cut(s) 206, 1172
TspRI CASTG 5 cut(s) 319, 853, 928, 1362, 1480
Van91I CCANNNNNTGG 3 cut(s) 230, 1357, 1648
VpaK11BI GGWCC 5 cut(s) 145, 527, 662, 1364, 1639
XagI CCTNNNNNAGG 1 cut(s) 1064
XapI RAATTY 2 cut(s) 79, 1314
XceI RCATGY 1 cut(s) 1774
XcmI CCANNNNNNNNNTGG 2 cut(s) 1358, 1421
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 3 cut(s) 953, 1061, 1568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.