Rroxscaffold_7G00213110

UDP-glucose flavonoid 3-O-glucosyltransferase 7-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
63601468 .. 63603481
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213110.1

Sequence Viewer

Length: 591 bp
ATGGAGTTGGATAGAATTAGCAGTTTACCAAATGATGTTACAGAGAAGATTTTGTCACGTTTGCCGCTTAAAGAGGCAGTAAGGACAAGTATTTTATCCACAAAGTGGAGGTACAAATCAGAAATGCTTCAAGATCTAGTGTTTGATGATCGCTGTGTGTCGACTCAAAGTCATCCAACCTGCAGCTTTGTGAATATTGTTGATCATGTACTCTTACTTCACACGGGCCCCATACGCAAGTTCAAGCTTTCTCGCAGAGATGAGCTAGCCACTAGAGACATGGACAGATGGATATTGCATCTATCGAGAAACCCTGTCATCAAAGAGATGATACTTGAGATTTGGAAAGGGAATCCCTACAGCGTTCCATCATGTTTGTTTTCTTGTCAAGATATCATTTACTTAGAGTTATACAGGTGTTTGCTAAACTGTCCGCGGTCCACATTCAAAGGCTTCAGGAGTTTGAAGACCCTTGATTTGGAGAATGTTACTATTATCCAAGATGTGTTTGAGAACTTGATTGATTGCAGTCCTCTGCTTGAGATATTGTACTTGCGAAATTGTGATGGTTTTCACCAATCTCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

22.95

Weight (kDa)

6.52

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 40 2.5e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 78 - 190 1e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 95 - 191 9.7e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 1 cut(s) 161
AccII CGCG 1 cut(s) 436
AciI CCGC 3 cut(s) 65, 434, 436
AcuI CTGAAG 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 105
AfaI GTAC 3 cut(s) 113, 210, 551
AfiI CCNNNNNNNGG 2 cut(s) 105, 478
AgsI TTSAA 4 cut(s) 131, 244, 448, 466
AhdI GACNNNNNGTC 1 cut(s) 168
AluBI AGCT 3 cut(s) 186, 247, 265
AluI AGCT 3 cut(s) 186, 247, 265
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 1 cut(s) 226
ApaI GGGCCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 183
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 3 cut(s) 226, 227, 438
AsuHPI GGTGA 1 cut(s) 566
AsuNHI GCTAGC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 195
BccI CCATC 3 cut(s) 282, 376, 560
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 3 cut(s) 137, 266, 273
BfmI CTRYAG 2 cut(s) 181, 358
BfuAI ACCTGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 65, 184
BlsI GCNGC 2 cut(s) 66, 185
Bme18I GGWCC 1 cut(s) 438
BmeRI GACNNNNNGTC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 226, 227, 438
BmiI GGNNCC 2 cut(s) 228, 229
BmsI GCATC 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 473
BpuEI CTTGAG 3 cut(s) 356, 560, 567
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 478
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 105, 478
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 105, 478
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 1 cut(s) 228
Bsp120I GGGCCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 133, 148, 202
BspACI CCGC 3 cut(s) 65, 434, 436
BspANI GGCC 1 cut(s) 228
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 228, 229
BspMAI CTGCAG 1 cut(s) 185
BspMI ACCTGC 1 cut(s) 188
BspOI GCTAGC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 3 cut(s) 133, 148, 202
Bst4CI ACNGT 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 403
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 3 cut(s) 136, 151, 205
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 3 cut(s) 133, 148, 202
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 181, 358
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 226, 227, 438
Cfr42I CCGCGG 1 cut(s) 437
Csp6I GTAC 3 cut(s) 112, 209, 550
CviAII CATG 3 cut(s) 206, 280, 372
CviJI RGCY 6 cut(s) 186, 228, 247, 265, 269, 453
CviKI_1 RGCY 6 cut(s) 186, 228, 247, 265, 269, 453
CviQI GTAC 3 cut(s) 112, 209, 550
DdeI CTNAG 1 cut(s) 403
DpnI GATC 3 cut(s) 135, 150, 204
DpnII GATC 3 cut(s) 133, 148, 202
DraIII CACNNNGTG 1 cut(s) 105
DriI GACNNNNNGTC 1 cut(s) 168
Eam1105I GACNNNNNGTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 230
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 438
Eco57I CTGAAG 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 227
EcoRV GATATC 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 3 cut(s) 209, 283, 375
FaiI YATR 5 cut(s) 207, 233, 281, 373, 412
FatI CATG 3 cut(s) 205, 279, 371
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 65, 184
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 65, 184
FspBI CTAG 3 cut(s) 137, 266, 273
GluI GCNGC 2 cut(s) 65, 184
HaeIII GGCC 1 cut(s) 228
Hin1II CATG 3 cut(s) 209, 283, 375
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 163, 352
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 3 cut(s) 26, 162, 441
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 131, 306, 389, 457, 584
Hpy8I GTNNAC 3 cut(s) 26, 162, 441
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 183, 298, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 209, 283, 375
Ksp22I TGATCA 1 cut(s) 202
KspI CCGCGG 1 cut(s) 437
Kzo9I GATC 3 cut(s) 133, 148, 202
LpnPI CCDG 4 cut(s) 193, 327, 400, 442
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 137, 266, 273
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 37, 54, 487
MalI GATC 3 cut(s) 135, 150, 204
MboI GATC 3 cut(s) 133, 148, 202
MboII GAAGA 2 cut(s) 58, 478
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 2 cut(s) 15, 559
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 3 cut(s) 67, 102, 543
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 436
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 3 cut(s) 133, 148, 202
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 3 cut(s) 209, 283, 375
NlaIV GGNNCC 2 cut(s) 228, 229
NmuCI GTSAC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 2 cut(s) 66, 185
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 228, 229
PspOMI GGGCCC 1 cut(s) 226
PspPI GGNCC 3 cut(s) 226, 227, 438
PstI CTGCAG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 3 cut(s) 113, 210, 551
RsaNI GTAC 3 cut(s) 112, 209, 550
SacII CCGCGG 1 cut(s) 437
SalI GTCGAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 65, 184
Sau3AI GATC 3 cut(s) 133, 148, 202
Sau96I GGNCC 3 cut(s) 226, 227, 438
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 230
SetI ASST 7 cut(s) 61, 113, 182, 188, 249, 267, 419
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 181, 358
Sfr303I CCGCGG 1 cut(s) 437
SgrBI CCGCGG 1 cut(s) 437
SinI GGWCC 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 335, 539, 582
SmoI CTYRAG 3 cut(s) 335, 539, 582
Sse9I AATT 2 cut(s) 15, 559
SsiI CCGC 3 cut(s) 65, 434, 436
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 137, 266, 273
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 161, 305
TasI AATT 2 cut(s) 15, 559
TatI WGTACW 2 cut(s) 208, 549
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 137, 266, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.