Rmu_sc0003139.1_g000013

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003139.1
OG0000103
Physical Location & Seq
Forward (+)
48326 .. 49887
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003139.1_g000013.1.cds

Sequence Viewer

Length: 1014 bp
atggtagcagacatcttagcgaagcatagtttggacaacaaattaggagtttgcagaatggacacaaaccctccgtttatgaatcaagttttgatggatgatattgatggcctggtgaggcctagcttggacaacgaattaggagtttgcagaaaggacacaaaccctccgtttatgaatcaagttttcatggatgatattgatggcctggtgaggcctaggatggttgtaacagcttcgaaagaaagtaaaacagtcaagttgtgttcgaatttgacggagttggatagaattagcaacttaccgaaggatcttgcagaaaagatattgtcacttttgccaattagggatgcagtgaggacgagtgttttatcaactaagtggaggtacaaatcagctatgctaccacatctggtgtttgatgctccgcaacaaacatttgcggctgttgttgatcatgtactcttaagtcacatcggccccttatacaagttcaagattgttaaaaaatatatatattttagagatatggatcggtggatacttcacatgtcaagaaactccatcaaacagttcacacttgaacaccagggaaactgctataaggtgccttcatctatgttttcatgtcaaggtttgactcatttagagttgcatagatgtttgctacaaccgccttccacattcacaggcttcaaaagtttgaaaagcctgacaattgttcgtgttagtctgacggacgatgtgcttgaaaatatgattgttcactgtcctctacttgagcggttgactgtggagttctgtgattatttcagccaactcaatatcaatgcaccaaatctccgatttctttactttattggtgattttgaggatattaatattgtgaatacctccaatcttgttgatgctataattgttttgcgagacaggagaagtggagaagtggggtccttgcagatctacaaatttgctaaagttctttgcaagccttccccatattcagaggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

337

Amino Acids

38.49

Weight (kDa)

8.3

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 784
AciI CCGC 4 cut(s) 428, 443, 674, 784
AclWI GGATC 2 cut(s) 318, 540
AcsI RAATTY 2 cut(s) 271, 968
AfaI GTAC 2 cut(s) 389, 462
AflII CTTAAG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 5 cut(s) 496, 584, 697, 706, 752
AjnI CCWGG 3 cut(s) 111, 207, 588
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 126, 236, 398
AluI AGCT 3 cut(s) 126, 236, 398
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 2 cut(s) 318, 540
AoxI GGCC 5 cut(s) 109, 119, 205, 215, 478
ApoI RAATTY 2 cut(s) 271, 968
AseI ATTAAT 1 cut(s) 879
AspA2I CCTAGG 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 479, 951
AsuHPI GGTGA 3 cut(s) 127, 223, 875
AsuII TTCGAA 2 cut(s) 239, 269
AvaII GGWCC 1 cut(s) 951
AvrII CCTAGG 1 cut(s) 218
BanI GGYRCC 1 cut(s) 607
BccI CCATC 5 cut(s) 88, 101, 197, 217, 572
BciT130I CCWGG 3 cut(s) 113, 209, 590
BciVI GTATCC 1 cut(s) 534
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 123, 219
BfrI CTTAAG 1 cut(s) 466
BfuI GTATCC 1 cut(s) 534
BglII AGATCT 1 cut(s) 960
BisI GCNGC 1 cut(s) 444
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 3 cut(s) 113, 209, 590
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 2 cut(s) 479, 951
BmiI GGNNCC 3 cut(s) 481, 609, 952
BmrFI CCNGG 3 cut(s) 113, 209, 590
BmsI GCATC 3 cut(s) 340, 412, 898
Bpu14I TTCGAA 2 cut(s) 239, 269
BpuEI CTTGAG 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 218, 589
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 151, 181, 825, 855
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 3 cut(s) 113, 209, 590
BseDI CCNNGG 2 cut(s) 218, 589
BseGI GGATG 4 cut(s) 103, 199, 228, 355
BseJI GATNNNNATC 1 cut(s) 531
BshFI GGCC 5 cut(s) 111, 121, 207, 217, 480
BshNI GGYRCC 1 cut(s) 607
BsmAI GTCTC 1 cut(s) 921
BsnI GGCC 5 cut(s) 111, 121, 207, 217, 480
Bsp119I TTCGAA 2 cut(s) 239, 269
Bsp143I GATC 4 cut(s) 310, 454, 532, 960
BspACI CCGC 4 cut(s) 428, 443, 674, 784
BspANI GGCC 5 cut(s) 111, 121, 207, 217, 480
BspLI GGNNCC 3 cut(s) 481, 609, 952
BspPI GGATC 2 cut(s) 318, 540
BspT104I TTCGAA 2 cut(s) 239, 269
BspT107I GGYRCC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 784
BssECI CCNNGG 2 cut(s) 218, 589
BssMI GATC 4 cut(s) 310, 454, 532, 960
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 113, 209, 590
Bst4CI ACNGT 4 cut(s) 256, 573, 770, 793
BstAFI CTTAAG 1 cut(s) 466
BstBI TTCGAA 2 cut(s) 239, 269
BstC8I GCNNGC 1 cut(s) 989
BstDEI CTNAG 3 cut(s) 16, 378, 1011
BstF5I GGATG 4 cut(s) 103, 199, 228, 355
BstKTI GATC 4 cut(s) 313, 457, 535, 963
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 4 cut(s) 310, 454, 532, 960
BstMWI GCNNNNNNNGC 1 cut(s) 673
BstNI CCWGG 3 cut(s) 113, 209, 590
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 3 cut(s) 111, 207, 588
BstX2I RGATCY 2 cut(s) 310, 960
BstYI RGATCY 2 cut(s) 310, 960
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 5 cut(s) 111, 121, 207, 217, 480
BtsCI GGATG 4 cut(s) 103, 199, 228, 355
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 766
Cac8I GCNNGC 1 cut(s) 989
Cfr13I GGNCC 2 cut(s) 479, 951
Csp6I GTAC 2 cut(s) 388, 461
CviAII CATG 4 cut(s) 190, 458, 550, 627
CviQI GTAC 2 cut(s) 388, 461
DdeI CTNAG 3 cut(s) 16, 378, 1011
DpnI GATC 4 cut(s) 312, 456, 534, 962
DpnII GATC 4 cut(s) 310, 454, 532, 960
Eco130I CCWWGG 1 cut(s) 218
Eco147I AGGCCT 2 cut(s) 121, 217
Eco47I GGWCC 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 951
EcoRII CCWGG 3 cut(s) 111, 207, 588
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 4 cut(s) 193, 461, 553, 630
FatI CATG 4 cut(s) 189, 457, 549, 626
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 4 cut(s) 110, 206, 235, 362
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 2 cut(s) 123, 219
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 5 cut(s) 111, 121, 207, 217, 480
Hin1II CATG 4 cut(s) 193, 461, 553, 630
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HinfI GANTC 3 cut(s) 82, 178, 640
HphI GGTGA 3 cut(s) 127, 223, 875
Hpy166II GTNNAC 3 cut(s) 576, 766, 789
Hpy188I TCNGA 3 cut(s) 735, 845, 1006
Hpy188III TCNNGA 2 cut(s) 496, 555
Hpy8I GTNNAC 3 cut(s) 576, 766, 789
HpyAV CCTTC 4 cut(s) 301, 621, 687, 1002
HpyCH4III ACNGT 4 cut(s) 256, 573, 770, 793
HpyCH4V TGCA 8 cut(s) 54, 150, 317, 353, 655, 833, 958, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 673
HpyF3I CTNAG 3 cut(s) 16, 378, 1011
Hsp92II CATG 4 cut(s) 193, 461, 553, 630
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 310, 454, 532, 960
LmnI GCTCC 1 cut(s) 430
LweI GCATC 3 cut(s) 340, 412, 898
MaeI CTAG 2 cut(s) 123, 219
MaeIII GTNAC 3 cut(s) 229, 330, 470
MalI GATC 4 cut(s) 312, 456, 534, 962
MbiI CCGCTC 1 cut(s) 784
MboI GATC 4 cut(s) 310, 454, 532, 960
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 310, 960
MluCI AATT 8 cut(s) 41, 137, 271, 291, 342, 717, 915, 968
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 264
MseI TTAA 3 cut(s) 467, 504, 879
MspCI CTTAAG 1 cut(s) 466
MspR9I CCNGG 3 cut(s) 113, 209, 590
MunI CAATTG 1 cut(s) 717
MvaI CCWGG 3 cut(s) 113, 209, 590
MwoI GCNNNNNNNGC 1 cut(s) 673
NdeII GATC 4 cut(s) 310, 454, 532, 960
NlaIII CATG 4 cut(s) 193, 461, 553, 630
NlaIV GGNNCC 3 cut(s) 481, 609, 952
NmuCI GTSAC 2 cut(s) 330, 470
NspI RCATGY 1 cut(s) 553
NspV TTCGAA 2 cut(s) 239, 269
PceI AGGCCT 2 cut(s) 121, 217
PciI ACATGT 1 cut(s) 549
PfeI GAWTC 2 cut(s) 82, 178
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 951
PscI ACATGT 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 951
Psp6I CCWGG 3 cut(s) 111, 207, 588
PspGI CCWGG 3 cut(s) 111, 207, 588
PspN4I GGNNCC 3 cut(s) 481, 609, 952
PspPI GGNCC 2 cut(s) 479, 951
PspPPI RGGWCCY 1 cut(s) 951
PsuI RGATCY 2 cut(s) 310, 960
RsaI GTAC 2 cut(s) 389, 462
RsaNI GTAC 2 cut(s) 388, 461
SaqAI TTAA 3 cut(s) 467, 504, 879
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 4 cut(s) 310, 454, 532, 960
Sau96I GGNCC 2 cut(s) 479, 951
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 3 cut(s) 113, 209, 590
SetI ASST 7 cut(s) 128, 238, 389, 400, 609, 637, 896
SfaNI GCATC 3 cut(s) 340, 412, 898
SfuI TTCGAA 2 cut(s) 239, 269
SinI GGWCC 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 466, 779
SmoI CTYRAG 2 cut(s) 466, 779
Sse9I AATT 8 cut(s) 41, 137, 271, 291, 342, 717, 915, 968
SseBI AGGCCT 2 cut(s) 121, 217
SsiI CCGC 4 cut(s) 428, 443, 674, 784
SspI AATATT 1 cut(s) 883
SspMI CTAG 2 cut(s) 123, 219
StuI AGGCCT 2 cut(s) 121, 217
StyD4I CCNGG 3 cut(s) 111, 207, 588
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 256, 573, 770, 793
TaqI TCGA 2 cut(s) 239, 269
TasI AATT 8 cut(s) 41, 137, 271, 291, 342, 717, 915, 968
TatI WGTACW 1 cut(s) 460
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 2 cut(s) 82, 178
Tru1I TTAA 3 cut(s) 467, 504, 879
Tru9I TTAA 3 cut(s) 467, 504, 879
TscAI CASTG 2 cut(s) 360, 773
TseFI GTSAC 2 cut(s) 330, 470
Tsp45I GTSAC 2 cut(s) 330, 470
TspDTI ATGAA 5 cut(s) 95, 178, 191, 603, 615
TspGWI ACGGA 4 cut(s) 63, 159, 293, 752
TspRI CASTG 2 cut(s) 360, 773
Vha464I CTTAAG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 951
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 2 cut(s) 271, 968
XceI RCATGY 1 cut(s) 553
XmaJI CCTAGG 1 cut(s) 218
XspI CTAG 2 cut(s) 123, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.