Rroxscaffold_1G00015220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000103
Physical Location & Seq
Reverse (-)
18950951 .. 18955594
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015220.1

Sequence Viewer

Length: 357 bp
ATGGTTGCACCGGCCCGATTCTTCACTCGAGTCTCCAACTCCGCCCACCGAGCTCGATTGACCCAATCCTACGAGCTATTCGAGATCGAGATAAACCCTTCGGTTATTGAGACCCAATCCACGGCTAAAACGGCACACTTCGCCGGCCTCCGCCTCGGCGGCTTAGTCTCTGCTCCTCCTAGAGTTCATCGAGTAATCCCCAAGCTTCCAAATCTAGTCGCTCTCACAAGACCTAGACTCGCCGGACTGTTCAACCTCTTCACCAATTGGATGACATCACGAATTTTGGGCAATTCAACCATAGCATGGGAGTGTAGTCGATATGATGAATGCGTGGCTACATTGGTTTCGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

10.03

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 306
AciI CCGC 3 cut(s) 42, 151, 159
AcsI RAATTY 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 121, 306
AgsI TTSAA 2 cut(s) 253, 297
AluBI AGCT 3 cut(s) 53, 76, 205
AluI AGCT 3 cut(s) 53, 76, 205
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 3 cut(s) 37, 104, 172
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 2 cut(s) 12, 145
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 27
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 138, 147
BcoDI GTCTC 3 cut(s) 37, 104, 172
BfaI CTAG 4 cut(s) 180, 215, 234, 355
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 120, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 306
Bse118I RCCGGY 2 cut(s) 10, 143
BseDI CCNNGG 2 cut(s) 120, 154
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 121, 306
BseRI GAGGAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 14, 147
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 11, 144, 243
BslI CCNNNNNNNGG 2 cut(s) 121, 306
BsmAI GTCTC 3 cut(s) 37, 104, 172
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 14, 147
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 3 cut(s) 42, 151, 159
BspANI GGCC 2 cut(s) 14, 147
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 10, 143
BssAI RCCGGY 2 cut(s) 10, 143
BssECI CCNNGG 2 cut(s) 120, 154
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 3 cut(s) 37, 104, 172
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 50, 131, 140, 159
BsuRI GGCC 2 cut(s) 14, 147
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 2 cut(s) 10, 143
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 1 cut(s) 306
CviJI RGCY 8 cut(s) 14, 53, 76, 125, 147, 162, 205, 338
CviKI_1 RGCY 8 cut(s) 14, 53, 76, 125, 147, 162, 205, 338
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 2 cut(s) 31, 140
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 1 cut(s) 309
FaiI YATR 3 cut(s) 302, 307, 324
FatI CATG 1 cut(s) 305
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 4 cut(s) 180, 215, 234, 355
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 14, 147
HapII CCGG 3 cut(s) 11, 144, 243
Hin1II CATG 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 18, 30, 237
HpaII CCGG 3 cut(s) 11, 144, 243
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 3 cut(s) 82, 88, 279
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 131, 140, 159
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 1 cut(s) 309
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 24, 157, 256
MaeI CTAG 4 cut(s) 180, 215, 234, 355
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 2 cut(s) 13, 250
MfeI CAATTG 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 265, 282, 292
MlyI GAGTC 2 cut(s) 39, 231
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 158, 164, 186, 266
MroNI GCCGGC 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 310
MspI CCGG 3 cut(s) 11, 144, 243
MunI CAATTG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 50, 131, 140, 159
NaeI GCCGGC 1 cut(s) 145
NdeII GATC 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 135
PaeR7I CTCGAG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 2 cut(s) 38, 231
PpsI GAGTC 2 cut(s) 38, 231
Psp124BI GAGCTC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 13
PspXI VCTCGAGB 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 310
SacI GAGCTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 39, 231
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 55, 78, 207, 235, 258
Sfr274I CTCGAG 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 265, 282, 292
SsiI CCGC 3 cut(s) 42, 151, 159
SspMI CTAG 4 cut(s) 180, 215, 234, 355
SstI GAGCTC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 6 cut(s) 28, 55, 81, 87, 190, 319
TasI AATT 3 cut(s) 265, 282, 292
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 176, 342
Van91I CCANNNNNTGG 1 cut(s) 306
XapI RAATTY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 4 cut(s) 180, 215, 234, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.