Rroxscaffold_2G00123380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000103
Physical Location & Seq
Reverse (-)
57224969 .. 57229649
4681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123380.1

Sequence Viewer

Length: 324 bp
ATGGATCACGACCGCCCTTCTTGCATTGTTCCAACTCCCCGATTCACTCGAGTCTCCAACTCCAACTCCTCCCACCGAGCCCGATTGACCCAATCCGACGAGCTATTCGAGATCGAGATAAACCCCTCCATTCTCGAGACCCAATCACGGCTAAAACTAGCGCACTTCGGCGGCCTCCGCCTCGGCGGCTCGATCTCTGCTCCTTCTAGAGTTCCTCGAGCAATCCCCAAGCTTCCAAATCCGGTCGCTCTCGCCGGGACTGCTCAACCTCTTCGCCAATTGGATGACATCACGGAGGTGGATGGAGATGGAGCAGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.58

Weight (kDa)

6.82

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 13, 171, 178, 186
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 103, 232
AluI AGCT 2 cut(s) 103, 232
Alw26I GTCTC 2 cut(s) 58, 131
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 3 cut(s) 48, 134, 216
AoxI GGCC 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspLEI GCGC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 256
AvaI CYCGRG 3 cut(s) 48, 134, 216
BanII GRGCYC 1 cut(s) 82
BccI CCATC 2 cut(s) 296, 302
BceAI ACGGC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 58, 131
BfaI CTAG 2 cut(s) 158, 207
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 2 cut(s) 172, 187
BlsI GCNGC 2 cut(s) 173, 188
Bme1390I CCNGG 1 cut(s) 256
BmeT110I CYCGRG 3 cut(s) 48, 134, 216
BmrFI CCNGG 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 3 cut(s) 50, 80, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 289, 307
BseLI CCNNNNNNNGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 58
Bsh1285I CGRYCG 2 cut(s) 13, 246
BshFI GGCC 1 cut(s) 174
BsiEI CGRYCG 2 cut(s) 13, 246
BsiHKCI CYCGRG 3 cut(s) 48, 134, 216
BsiSI CCGG 2 cut(s) 242, 255
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 58, 131
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 3 cut(s) 48, 134, 216
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 4, 111, 192
BspACI CCGC 4 cut(s) 13, 171, 178, 186
BspANI GGCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 3 cut(s) 4, 111, 192
Bst6I CTCTTC 1 cut(s) 276
BstF5I GGATG 2 cut(s) 289, 307
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 7, 114, 195
BstMAI GTCTC 2 cut(s) 58, 131
BstMBI GATC 3 cut(s) 4, 111, 192
BstMCI CGRYCG 2 cut(s) 13, 246
BstMWI GCNNNNNNNGC 4 cut(s) 21, 177, 186, 260
BstSCI CCNGG 1 cut(s) 254
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 289, 307
CfoI GCGC 1 cut(s) 163
CviJI RGCY 6 cut(s) 80, 103, 151, 174, 189, 232
CviKI_1 RGCY 6 cut(s) 80, 103, 151, 174, 189, 232
DpnI GATC 3 cut(s) 6, 113, 194
DpnII GATC 3 cut(s) 4, 111, 192
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 131
Eco88I CYCGRG 3 cut(s) 48, 134, 216
EcoT38I GRGCYC 1 cut(s) 82
FaqI GGGAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 172, 187
FokI GGATG 2 cut(s) 296, 314
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 172, 187
FspBI CTAG 2 cut(s) 158, 207
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 172, 187
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 242, 255
HhaI GCGC 1 cut(s) 163
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 42, 51
HpaII CCGG 2 cut(s) 242, 255
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 6 cut(s) 8, 109, 115, 134, 136, 207
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 27, 213
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 177, 186, 260
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 4, 111, 192
LmnI GCTCC 2 cut(s) 205, 311
LpnPI CCDG 2 cut(s) 255, 268
MaeI CTAG 2 cut(s) 158, 207
MalI GATC 3 cut(s) 6, 113, 194
MboI GATC 3 cut(s) 4, 111, 192
MboII GAAGA 1 cut(s) 263
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 278
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 4 cut(s) 56, 81, 87, 120
MnlI CCTC 7 cut(s) 79, 136, 185, 191, 225, 279, 289
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 2 cut(s) 242, 255
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 278
MwoI GCNNNNNNNGC 4 cut(s) 21, 177, 186, 260
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 4, 111, 192
NmeAIII GCCGAG 1 cut(s) 162
OliI CACNNNNGTG 1 cut(s) 296
PaeR7I CTCGAG 3 cut(s) 48, 134, 216
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 173, 188
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspXI VCTCGAGB 2 cut(s) 48, 216
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 2 cut(s) 172, 187
Sau3AI GATC 3 cut(s) 4, 111, 192
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 82
SetI ASST 4 cut(s) 105, 234, 271, 300
Sfr274I CTCGAG 3 cut(s) 48, 134, 216
SlaI CTCGAG 3 cut(s) 48, 134, 216
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 48, 134, 216
SmoI CTYRAG 3 cut(s) 48, 134, 216
Sse9I AATT 1 cut(s) 278
SsiI CCGC 4 cut(s) 13, 171, 178, 186
SspMI CTAG 2 cut(s) 158, 207
StyD4I CCNGG 1 cut(s) 254
TaqI TCGA 6 cut(s) 49, 108, 114, 135, 191, 217
TasI AATT 1 cut(s) 278
TauI GCSGC 2 cut(s) 174, 189
TfiI GAWTC 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 308
XbaI TCTAGA 1 cut(s) 206
XhoI CTCGAG 3 cut(s) 48, 134, 216
XspI CTAG 2 cut(s) 158, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.