Rmu_sc0002393.1_g000011

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002393.1
OG0000103
Physical Location & Seq
Reverse (-)
59541 .. 63795
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002393.1_g000011.1.cds

Sequence Viewer

Length: 1887 bp
atgccagggcaggagggaagcagctcacaaagggcaccaccatacaaagttacaaagagaggagaacaagaacagtcaaaagtagactctgggacagaactagatcaagacgaagctctgccaagatacgggtcgatgcttagtggtcaaattaaagtactgaagaaggggttggatagaattagcagtttaccaaatgatgtcacagaaatgattttgtcacgtttgccgcttagggaagctgtgaggacaagtgttttatccagcaagtggaggtacaaatcggccatgcttcaagatctaaaatttaatgaatatgtttggaggagaagccaaaatcggtatgatgatcaaatccaaacaaccttcgtgaacatggttgatcatgtactcttacttcatattggccccattcgcaagttcgagctgtttgctgatgatttagccactagagatattgatcgatggcttactcatctatcaagaaactcgatcaaagagctggtacttcgtctttgcgtatctgaatatcacattccattatgtgtgttttcttgtcaagatctcgttcttttggtgttaactcaatcttttcttacggagtcaaatttacataaggtttggctcaaacctccgtcgacgttcaaaggattcaggagcttgaagagccttcaacttgtgggcatcaccatggcccaacatgtgtttgaaaatttgacatgttgcactcctctgcttgagagattaatattgcgacattgttatggtgtcaccactctcaatattgatgcaccaaatctcaaatttttagatatttcaggtgtctttgatgttgtcaatcctaaaagtaccctaaatcttactgatgcttcaatcggtgtgaccatctattctcctgtcagtcgggttcctgtcagttgggttcctagcagttccagcaatttgctcaagattttttatcacctccctcatattcgaaggttcgcaattaagtcgcactttttaaagttactcaagtgcttgctcaaacctccgtcaacattcaaagggttcaagagcttgaagagtcttcaactccacgctgttgacatggcccaagatgtgtttgaaaatttgattcgttgcagtcctctgcttgagggattaacattgcgacattgtgacggtgtcaacaatctcaaaattgacgcaccaaatctcaaatctttagatattttcggtgtctttgatgttgtcaacctgaaaagtaccctaaatcttactgatgcttcaatcgttttgaccatcaattctgatggtcctcacgatagatgggttcctgacagttgggttcctagcagttctagcaatttgctcaagattattgatcacctccctcatattagaaggctcgcaattaagtcgcactttttaaagtatttgtctctgggcgccttgccagaaaagctcactaaaccatgtcaacatctgaaggctctttctatagacatatgctgcgatgatccggatgcaattccaactgctctatgcattctgagaagctcccctgctctacaagaactagaaattgaggtggatccgagtgagaaactcccaaggatacactctattgtcgaagaagtgaactctccttgtgtaaatgacaactacaattgcacattttctcaattgcgacttgtgaaaataactaagatctctggtgttaaagctgaactagatttcatcagatttgtacttttaagttcacctgtgcttgagagaatgactgtcacgcctcgtagatttcccgagccttcttatgtggatggttttccgaaactagtaaaagagctactccagtttaaacgtgaatcaaagcatgcagagataattctcctggacccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

628

Amino Acids

71.15

Weight (kDa)

8.8

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 1430
AccB7I CCANNNNNTGG 1 cut(s) 270
AccI GTMKAC 2 cut(s) 84, 638
AccIII TCCGGA 1 cut(s) 1504
AciI CCGC 1 cut(s) 230
AclWI GGATC 3 cut(s) 1496, 1571, 1584
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 5 cut(s) 305, 607, 712, 803, 1111
AcuI CTGAAG 2 cut(s) 182, 1490
AcyI GRCGYC 1 cut(s) 1431
AfaI GTAC 7 cut(s) 159, 278, 390, 507, 850, 1249, 1734
AfiI CCNNNNNNNGG 2 cut(s) 128, 270
AflIII ACRYGT 2 cut(s) 700, 719
AhlI ACTAGT 1 cut(s) 1819
AjnI CCWGG 2 cut(s) 4, 1875
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
Alw26I GTCTC 1 cut(s) 1428
AlwI GGATC 3 cut(s) 1496, 1571, 1584
Ama87I CYCGRG 1 cut(s) 1787
Aor13HI TCCGGA 1 cut(s) 1504
AoxI GGCC 4 cut(s) 285, 406, 693, 1092
ApeKI GCWGC 2 cut(s) 21, 1494
ApoI RAATTY 5 cut(s) 305, 607, 712, 803, 1111
AseI ATTAAT 1 cut(s) 746
AspLEI GCGC 1 cut(s) 1433
AspS9I GGNCC 5 cut(s) 407, 694, 1093, 1298, 1879
AsuHPI GGTGA 5 cut(s) 679, 763, 953, 1361, 1737
AsuII TTCGAA 1 cut(s) 976
AvaI CYCGRG 1 cut(s) 1787
AvaII GGWCC 2 cut(s) 1298, 1879
BaeGI GKGCMC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 1576
BanI GGYRCC 2 cut(s) 34, 1430
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BbsI GAAGAC 1 cut(s) 1061
BbvI GCAGC 2 cut(s) 33, 1481
BccI CCATC 6 cut(s) 459, 893, 1289, 1292, 1305, 1799
BcgI CGANNNNNNTGC 6 cut(s) 413, 447, 975, 1009, 1383, 1417
BciT130I CCWGG 2 cut(s) 6, 1877
BciVI GTATCC 1 cut(s) 1593
BclI TGATCA 3 cut(s) 349, 382, 1366
BcoDI GTCTC 1 cut(s) 1428
BcuI ACTAGT 1 cut(s) 1819
BfaI CTAG 8 cut(s) 101, 450, 927, 1335, 1344, 1562, 1715, 1820
BfmI CTRYAG 1 cut(s) 1482
BfoI RGCGCY 1 cut(s) 1434
BfuI GTATCC 1 cut(s) 1593
BglII AGATCT 3 cut(s) 298, 562, 1692
BisI GCNGC 3 cut(s) 22, 230, 1495
BlsI GCNGC 3 cut(s) 23, 231, 1496
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 6, 1877
Bme18I GGWCC 2 cut(s) 1298, 1879
BmeT110I CYCGRG 1 cut(s) 1787
BmgT120I GGNCC 5 cut(s) 407, 694, 1093, 1298, 1879
BmiI GGNNCC 9 cut(s) 36, 409, 909, 924, 1317, 1332, 1432, 1578, 1881
BmrFI CCNGG 2 cut(s) 6, 1877
BmsI GCATC 6 cut(s) 126, 693, 778, 856, 1255, 1498
BpiI GAAGAC 1 cut(s) 1061
BpmI CTGGAG 1 cut(s) 1820
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 976
BpuEI CTTGAG 6 cut(s) 758, 932, 998, 1157, 1340, 1775
Bsa29I ATCGAT 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 1431
BsaJI CCNNGG 3 cut(s) 5, 690, 1595
BsaWI WCCGGW 1 cut(s) 1504
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 270
Bse1I ACTGG 1 cut(s) 1837
Bse3DI GCAATG 1 cut(s) 1148
Bse8I GATNNNNATC 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 1504
BseBI CCWGG 2 cut(s) 6, 1877
BseCI ATCGAT 1 cut(s) 463
BseDI CCNNGG 3 cut(s) 5, 690, 1595
BseGI GGATG 2 cut(s) 1513, 1810
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 128, 270
BseMI GCAATG 1 cut(s) 1148
BseMII CTCAG 1 cut(s) 1526
BseNI ACTGG 1 cut(s) 1837
BseRI GAGGAG 3 cut(s) 75, 340, 720
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 33, 1481
BshFI GGCC 4 cut(s) 287, 408, 695, 1094
BshNI GGYRCC 2 cut(s) 34, 1430
BshVI ATCGAT 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 1787
BsiSI CCGG 1 cut(s) 1505
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 128, 270
BsmAI GTCTC 1 cut(s) 1428
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 1530
BsnI GGCC 4 cut(s) 287, 408, 695, 1094
BsoBI CYCGRG 1 cut(s) 1787
Bsp119I TTCGAA 1 cut(s) 976
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 1504
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 1 cut(s) 230
BspANI GGCC 4 cut(s) 287, 408, 695, 1094
BspCNI CTCAG 1 cut(s) 1527
BspDI ATCGAT 1 cut(s) 463
BspEI TCCGGA 1 cut(s) 1504
BspLI GGNNCC 9 cut(s) 36, 409, 909, 924, 1317, 1332, 1432, 1578, 1881
BspPI GGATC 3 cut(s) 1496, 1571, 1584
BspQI GCTCTTC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 976
BspT107I GGYRCC 2 cut(s) 34, 1430
BsrDI GCAATG 1 cut(s) 1148
BsrI ACTGG 1 cut(s) 1837
BssECI CCNNGG 3 cut(s) 5, 690, 1595
BssNI GRCGYC 1 cut(s) 1431
BssT1I CCWWGG 2 cut(s) 690, 1595
Bst2UI CCWGG 2 cut(s) 6, 1877
Bst4CI ACNGT 4 cut(s) 75, 1166, 1325, 1768
Bst6I CTCTTC 2 cut(s) 659, 1058
BstACI GRCGYC 1 cut(s) 1431
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 3 cut(s) 1022, 1392, 1860
BstDEI CTNAG 4 cut(s) 140, 233, 1535, 1689
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 2 cut(s) 1513, 1810
BstH2I RGCGCY 1 cut(s) 1434
BstHHI GCGC 1 cut(s) 1433
BstMAI GTCTC 1 cut(s) 1428
BstMWI GCNNNNNNNGC 5 cut(s) 414, 666, 936, 1344, 1444
BstNI CCWGG 2 cut(s) 6, 1877
BstNSI RCATGY 3 cut(s) 704, 723, 1862
BstSCI CCNGG 2 cut(s) 4, 1875
BstSFI CTRYAG 1 cut(s) 1482
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 33, 1481
BstV2I GAAGAC 1 cut(s) 1061
BstX2I RGATCY 4 cut(s) 298, 562, 1576, 1692
BstYI RGATCY 4 cut(s) 298, 562, 1576, 1692
Bsu15I ATCGAT 1 cut(s) 463
BsuI GTATCC 1 cut(s) 1593
BsuRI GGCC 4 cut(s) 287, 408, 695, 1094
BsuTUI ATCGAT 1 cut(s) 463
BtgI CCRYGG 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 1512
BtsCI GGATG 2 cut(s) 1513, 1810
Cac8I GCNNGC 3 cut(s) 1022, 1392, 1860
CfoI GCGC 1 cut(s) 1433
Cfr13I GGNCC 5 cut(s) 407, 694, 1093, 1298, 1879
ClaI ATCGAT 1 cut(s) 463
CseI GACGC 1 cut(s) 1196
Csp6I GTAC 7 cut(s) 158, 277, 389, 506, 849, 1248, 1733
CviAII CATG 9 cut(s) 289, 376, 386, 691, 701, 720, 1090, 1458, 1859
CviQI GTAC 7 cut(s) 158, 277, 389, 506, 849, 1248, 1733
DdeI CTNAG 4 cut(s) 140, 233, 1535, 1689
DinI GGCGCC 1 cut(s) 1432
DraI TTTAAA 3 cut(s) 1005, 1413, 1843
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 659, 1058
EarI CTCTTC 2 cut(s) 659, 1058
Eco130I CCWWGG 2 cut(s) 690, 1595
Eco47I GGWCC 2 cut(s) 1298, 1879
Eco57I CTGAAG 2 cut(s) 182, 1490
Eco88I CYCGRG 1 cut(s) 1787
EcoRII CCWGG 2 cut(s) 4, 1875
EcoT14I CCWWGG 2 cut(s) 690, 1595
EcoT22I ATGCAT 1 cut(s) 1532
EgeI GGCGCC 1 cut(s) 1432
EheI GGCGCC 1 cut(s) 1432
ErhI CCWWGG 2 cut(s) 690, 1595
FaeI CATG 9 cut(s) 292, 379, 389, 694, 704, 723, 1093, 1461, 1862
FalI AAGNNNNNCTT 4 cut(s) 983, 1015, 1391, 1423
FaqI GGGAC 1 cut(s) 106
FatI CATG 9 cut(s) 288, 375, 385, 690, 700, 719, 1089, 1457, 1858
FauNDI CATATG 1 cut(s) 1490
FbaI TGATCA 3 cut(s) 349, 382, 1366
FblI GTMKAC 2 cut(s) 84, 638
Fnu4HI GCNGC 3 cut(s) 22, 230, 1495
FokI GGATG 2 cut(s) 1520, 1817
Fsp4HI GCNGC 3 cut(s) 22, 230, 1495
FspBI CTAG 8 cut(s) 101, 450, 927, 1335, 1344, 1562, 1715, 1820
GlaI GCGC 1 cut(s) 1432
GluI GCNGC 3 cut(s) 22, 230, 1495
GsuI CTGGAG 1 cut(s) 1820
HaeII RGCGCY 1 cut(s) 1434
HaeIII GGCC 4 cut(s) 287, 408, 695, 1094
HapII CCGG 1 cut(s) 1505
HgaI GACGC 1 cut(s) 1196
HhaI GCGC 1 cut(s) 1433
Hin1I GRCGYC 1 cut(s) 1431
Hin1II CATG 9 cut(s) 292, 379, 389, 694, 704, 723, 1093, 1461, 1862
Hin6I GCGC 1 cut(s) 1431
HinP1I GCGC 1 cut(s) 1431
HincII GTYRAC 7 cut(s) 582, 639, 1038, 1087, 1171, 1237, 1463
HindII GTYRAC 7 cut(s) 582, 639, 1038, 1087, 1171, 1237, 1463
HinfI GANTC 6 cut(s) 86, 602, 651, 1066, 1117, 1850
HpaI GTTAAC 1 cut(s) 582
HpaII CCGG 1 cut(s) 1505
HphI GGTGA 5 cut(s) 679, 763, 953, 1361, 1737
Hpy188I TCNGA 7 cut(s) 526, 1294, 1470, 1536, 1581, 1727, 1815
Hpy99I CGWCG 2 cut(s) 640, 643
HpyAV CCTTC 7 cut(s) 160, 376, 680, 972, 1380, 1465, 1803
HpyCH4III ACNGT 4 cut(s) 75, 1166, 1325, 1768
HpyCH4IV ACGT 3 cut(s) 223, 641, 1846
HpyCH4V TGCA 7 cut(s) 726, 791, 1125, 1511, 1530, 1656, 1862
HpyF10VI GCNNNNNNNGC 5 cut(s) 414, 666, 936, 1344, 1444
HpyF3I CTNAG 4 cut(s) 140, 233, 1535, 1689
HpySE526I ACGT 3 cut(s) 223, 641, 1846
Hsp92I GRCGYC 1 cut(s) 1431
Hsp92II CATG 9 cut(s) 292, 379, 389, 694, 704, 723, 1093, 1461, 1862
HspAI GCGC 1 cut(s) 1431
KasI GGCGCC 1 cut(s) 1430
Kpn2I TCCGGA 1 cut(s) 1504
Ksp22I TGATCA 3 cut(s) 349, 382, 1366
KspAI GTTAAC 1 cut(s) 582
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 2 cut(s) 657, 1547
Lsp1109I GCAGC 2 cut(s) 33, 1481
LweI GCATC 6 cut(s) 126, 693, 778, 856, 1255, 1498
MaeI CTAG 8 cut(s) 101, 450, 927, 1335, 1344, 1562, 1715, 1820
MaeII ACGT 3 cut(s) 223, 641, 1846
MaeIII GTNAC 8 cut(s) 49, 202, 219, 769, 880, 1008, 1160, 1768
MboII GAAGA 5 cut(s) 175, 676, 1061, 1075, 1628
MfeI CAATTG 2 cut(s) 1651, 1667
MflI RGATCY 4 cut(s) 298, 562, 1576, 1692
MhlI GDGCHC 1 cut(s) 37
Mly113I GGCGCC 1 cut(s) 1431
MlyI GAGTC 3 cut(s) 80, 611, 1075
MmeI TCCRAC 2 cut(s) 153, 1541
Mph1103I ATGCAT 1 cut(s) 1532
MroI TCCGGA 1 cut(s) 1504
MslI CAYNNNNRTG 3 cut(s) 209, 689, 762
MspI CCGG 1 cut(s) 1505
MspR9I CCNGG 2 cut(s) 6, 1877
MssI GTTTAAAC 1 cut(s) 1843
MunI CAATTG 2 cut(s) 1651, 1667
Mva1269I GAATGC 1 cut(s) 1530
MvaI CCWGG 2 cut(s) 6, 1877
MwoI GCNNNNNNNGC 5 cut(s) 414, 666, 936, 1344, 1444
NarI GGCGCC 1 cut(s) 1431
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 1490
NlaIII CATG 9 cut(s) 292, 379, 389, 694, 704, 723, 1093, 1461, 1862
NlaIV GGNNCC 9 cut(s) 36, 409, 909, 924, 1317, 1332, 1432, 1578, 1881
NmuCI GTSAC 6 cut(s) 202, 219, 769, 880, 1160, 1768
NsiI ATGCAT 1 cut(s) 1532
NspI RCATGY 3 cut(s) 704, 723, 1862
NspV TTCGAA 1 cut(s) 976
PaeI GCATGC 1 cut(s) 1862
PciI ACATGT 2 cut(s) 700, 719
PciSI GCTCTTC 1 cut(s) 659
PctI GAATGC 1 cut(s) 1530
PfeI GAWTC 3 cut(s) 651, 1117, 1850
PflFI GACNNNGTC 1 cut(s) 1166
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 1875
PkrI GCNGC 3 cut(s) 23, 231, 1496
PleI GAGTC 3 cut(s) 80, 610, 1074
PluTI GGCGCC 1 cut(s) 1434
PmeI GTTTAAAC 1 cut(s) 1843
PpsI GAGTC 3 cut(s) 80, 610, 1074
PscI ACATGT 2 cut(s) 700, 719
PshBI ATTAAT 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 4, 1875
PspGI CCWGG 2 cut(s) 4, 1875
PspN4I GGNNCC 9 cut(s) 36, 409, 909, 924, 1317, 1332, 1432, 1578, 1881
PspPI GGNCC 5 cut(s) 407, 694, 1093, 1298, 1879
PsuI RGATCY 4 cut(s) 298, 562, 1576, 1692
PsyI GACNNNGTC 1 cut(s) 1166
RsaI GTAC 7 cut(s) 159, 278, 390, 507, 850, 1249, 1734
RsaNI GTAC 7 cut(s) 158, 277, 389, 506, 849, 1248, 1733
RseI CAYNNNNRTG 3 cut(s) 209, 689, 762
SalI GTCGAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 659
SatI GCNGC 3 cut(s) 22, 230, 1495
Sau96I GGNCC 5 cut(s) 407, 694, 1093, 1298, 1879
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 3 cut(s) 80, 611, 1075
ScrFI CCNGG 2 cut(s) 6, 1877
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 6 cut(s) 126, 693, 778, 856, 1255, 1498
SfcI CTRYAG 1 cut(s) 1482
SfoI GGCGCC 1 cut(s) 1432
SfuI TTCGAA 1 cut(s) 976
SgrDI CGTCGACG 1 cut(s) 637
SinI GGWCC 2 cut(s) 1298, 1879
SmiMI CAYNNNNRTG 3 cut(s) 209, 689, 762
SmlI CTYRAG 6 cut(s) 737, 947, 1013, 1136, 1355, 1754
SmoI CTYRAG 6 cut(s) 737, 947, 1013, 1136, 1355, 1754
SpeI ACTAGT 1 cut(s) 1819
SphI GCATGC 1 cut(s) 1862
SsiI CCGC 1 cut(s) 230
SspDI GGCGCC 1 cut(s) 1430
SspI AATATT 2 cut(s) 750, 784
SspMI CTAG 8 cut(s) 101, 450, 927, 1335, 1344, 1562, 1715, 1820
StyD4I CCNGG 2 cut(s) 4, 1875
StyI CCWWGG 2 cut(s) 690, 1595
TaaI ACNGT 4 cut(s) 75, 1166, 1325, 1768
TaiI ACGT 3 cut(s) 226, 644, 1849
TaqI TCGA 7 cut(s) 134, 423, 463, 491, 638, 976, 1614
TatI WGTACW 3 cut(s) 157, 388, 1732
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 3 cut(s) 651, 1117, 1850
TseFI GTSAC 6 cut(s) 202, 219, 769, 880, 1160, 1768
TseI GCWGC 2 cut(s) 21, 1494
Tsp45I GTSAC 6 cut(s) 202, 219, 769, 880, 1160, 1768
TspDTI ATGAA 3 cut(s) 327, 389, 1711
TspGWI ACGGA 3 cut(s) 614, 624, 1023
Tth111I GACNNNGTC 1 cut(s) 1166
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 1298, 1879
VspI ATTAAT 1 cut(s) 746
XapI RAATTY 5 cut(s) 305, 607, 712, 803, 1111
XceI RCATGY 3 cut(s) 704, 723, 1862
XmiI GTMKAC 2 cut(s) 84, 638
XspI CTAG 8 cut(s) 101, 450, 927, 1335, 1344, 1562, 1715, 1820
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.