Rw7G004270

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000103
Physical Location & Seq
Reverse (-)
3577843 .. 3578853
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004270.1

Sequence Viewer

Length: 780 bp
ATGAGTTTGGAGCATCTTGACATTAGGCATGTTACGTCGGCCCAACATGTCTTTGAAGATTTTATTGTTTGTTGTCCTGTGCTTAAGAGACTGATTTTGAAATACTGTGATGGTTTCACAAATCTCTGCATTGATGCACCAAATCTCAAATTGCTTGATATAGATGGTAGTTTTGAGGATGTTAGTCTTCAGAATACCTTACATCTTGAACATGTTGACATCCGTTTGGAATTCAAAGTCAGCTGGGTTGTTGGCGGTTCATCCAATTTGGTCAAGTTTTTCGTTCACCTACCTAATATTCGTGACCTTCAAATTTCAGGTTACGTTTTAAAGTATTTGGCTGTTGGTCCCTTGCTACGAAAGCTGCCTCAACCAATACTATTTCTGAATGATCTTTATATGGATGTAAACTTCACTGATCTGGAGGAGATTACAACTGCTCTATGCCTTGTAAGAAGCTCCCCTGCTCTACGAAAACTAGAGATTGTGGTCAACCATATTGATTATCATCATGTTGTGGGAGAAGTGAACTCATGGTTTGAAAATTTAGGCGAAAACTCAGATTGTCAACTCACTGAACTTCAACGTATAGAAATTGTTGCCATCTCTGATGCCAAAGCTGAACTAGATTTTATCAAATTGCTGCTGTTAAGTTCACCTGTACTGGAGTGCACGACTCTTAAGCCTTTTTCTGTGGATGGCTCTTTGGAACTGTTAAAACAGGTGGTCTGGTTTAGGCCTGCCTCGGTGCAGGCTGAGATAATCTTCTTGGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

4.98

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 162 9e-09 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 26 - 228 8.1e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AcsI RAATTY 3 cut(s) 230, 312, 544
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 663
AflII CTTAAG 2 cut(s) 83, 680
AflIII ACRYGT 2 cut(s) 46, 211
AgsI TTSAA 7 cut(s) 56, 100, 209, 235, 311, 542, 584
AluBI AGCT 4 cut(s) 243, 364, 459, 620
AluI AGCT 4 cut(s) 243, 364, 459, 620
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 670
AoxI GGCC 2 cut(s) 39, 737
ApaLI GTGCAC 1 cut(s) 670
ApeKI GCWGC 2 cut(s) 364, 643
ApoI RAATTY 3 cut(s) 230, 312, 544
AspS9I GGNCC 3 cut(s) 40, 347, 772
AsuHPI GGTGA 2 cut(s) 278, 648
AvaII GGWCC 2 cut(s) 347, 772
BaeGI GKGCMC 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 674
BbvI GCAGC 2 cut(s) 351, 630
BccI CCATC 4 cut(s) 104, 158, 611, 692
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 479, 626
BfrI CTTAAG 2 cut(s) 83, 680
BisI GCNGC 2 cut(s) 365, 644
BlsI GCNGC 2 cut(s) 366, 645
Bme18I GGWCC 2 cut(s) 347, 772
BmgT120I GGNCC 3 cut(s) 40, 347, 772
BmiI GGNNCC 2 cut(s) 349, 774
BmsI GCATC 3 cut(s) 22, 124, 601
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 2 cut(s) 443, 686
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 744
Bse1I ACTGG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 5 cut(s) 184, 219, 260, 409, 703
BseJI GATNNNNATC 1 cut(s) 507
BseMII CTCAG 2 cut(s) 573, 747
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 2 cut(s) 351, 630
BseYI CCCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 2 cut(s) 41, 739
BsiHKAI GWGCWC 1 cut(s) 674
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 2 cut(s) 41, 739
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 2 cut(s) 391, 418
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 41, 739
BspCNI CTCAG 2 cut(s) 572, 748
BspLI GGNNCC 2 cut(s) 349, 774
BspTI CTTAAG 2 cut(s) 83, 680
BsrI ACTGG 1 cut(s) 669
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 2 cut(s) 391, 418
Bst4CI ACNGT 2 cut(s) 107, 714
BstAFI CTTAAG 2 cut(s) 83, 680
BstC8I GCNNGC 2 cut(s) 741, 753
BstDEI CTNAG 2 cut(s) 559, 756
BstF5I GGATG 5 cut(s) 184, 219, 260, 409, 703
BstKTI GATC 2 cut(s) 394, 421
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 391, 418
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 3 cut(s) 32, 50, 215
BstSLI GKGCMC 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 351, 630
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 41, 739
BtsCI GGATG 5 cut(s) 184, 219, 260, 409, 703
BtsIMutI CAGTG 2 cut(s) 414, 573
Cac8I GCNNGC 2 cut(s) 741, 753
Cfr13I GGNCC 3 cut(s) 40, 347, 772
Csp6I GTAC 1 cut(s) 662
CviAII CATG 5 cut(s) 29, 47, 212, 512, 534
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 2 cut(s) 559, 756
DpnI GATC 2 cut(s) 393, 420
DpnII GATC 2 cut(s) 391, 418
DraI TTTAAA 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 347, 772
Eco57I CTGAAG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 230
FaeI CATG 5 cut(s) 32, 50, 215, 515, 537
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 28, 46, 211, 511, 533
Fnu4HI GCNGC 2 cut(s) 365, 644
FokI GGATG 5 cut(s) 191, 206, 247, 416, 710
Fsp4HI GCNGC 2 cut(s) 365, 644
FspBI CTAG 2 cut(s) 479, 626
GluI GCNGC 2 cut(s) 365, 644
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 2 cut(s) 443, 686
HaeIII GGCC 2 cut(s) 41, 739
Hin1II CATG 5 cut(s) 32, 50, 215, 515, 537
HincII GTYRAC 3 cut(s) 217, 493, 569
HindII GTYRAC 3 cut(s) 217, 493, 569
HinfI GANTC 1 cut(s) 676
HphI GGTGA 2 cut(s) 278, 648
Hpy166II GTNNAC 8 cut(s) 217, 286, 409, 493, 529, 569, 656, 672
Hpy188I TCNGA 4 cut(s) 192, 387, 562, 610
Hpy188III TCNNGA 4 cut(s) 17, 206, 302, 422
Hpy8I GTNNAC 8 cut(s) 217, 286, 409, 493, 529, 569, 656, 672
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 107, 714
HpyCH4IV ACGT 3 cut(s) 35, 324, 586
HpyCH4V TGCA 4 cut(s) 129, 137, 672, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 559, 756
HpySE526I ACGT 3 cut(s) 35, 324, 586
Hsp92II CATG 5 cut(s) 32, 50, 215, 515, 537
Kzo9I GATC 2 cut(s) 391, 418
LmnI GCTCC 2 cut(s) 10, 464
Lsp1109I GCAGC 2 cut(s) 351, 630
LweI GCATC 3 cut(s) 22, 124, 601
MaeI CTAG 2 cut(s) 479, 626
MaeII ACGT 3 cut(s) 35, 324, 586
MaeIII GTNAC 3 cut(s) 31, 302, 320
MalI GATC 2 cut(s) 393, 420
MboI GATC 2 cut(s) 391, 418
MboII GAAGA 3 cut(s) 68, 179, 757
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 7 cut(s) 149, 230, 265, 312, 544, 594, 638
MlyI GAGTC 1 cut(s) 670
MnlI CCTC 4 cut(s) 169, 378, 418, 754
MseI TTAA 5 cut(s) 84, 329, 650, 681, 716
MspA1I CMGCKG 1 cut(s) 243
MspCI CTTAAG 2 cut(s) 83, 680
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 2 cut(s) 391, 418
NlaIII CATG 5 cut(s) 32, 50, 215, 515, 537
NlaIV GGNNCC 2 cut(s) 349, 774
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 3 cut(s) 32, 50, 215
PceI AGGCCT 1 cut(s) 739
PciI ACATGT 2 cut(s) 46, 211
PkrI GCNGC 2 cut(s) 366, 645
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PscI ACATGT 2 cut(s) 46, 211
PspFI CCCAGC 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 349, 774
PspPI GGNCC 3 cut(s) 40, 347, 772
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
SaqAI TTAA 5 cut(s) 84, 329, 650, 681, 716
SatI GCNGC 2 cut(s) 365, 644
Sau3AI GATC 2 cut(s) 391, 418
Sau96I GGNCC 3 cut(s) 40, 347, 772
SchI GAGTC 1 cut(s) 670
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 3 cut(s) 22, 124, 601
SinI GGWCC 2 cut(s) 347, 772
SmlI CTYRAG 2 cut(s) 83, 680
SmoI CTYRAG 2 cut(s) 83, 680
Sse9I AATT 7 cut(s) 149, 230, 265, 312, 544, 594, 638
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 479, 626
StuI AGGCCT 1 cut(s) 739
TaaI ACNGT 2 cut(s) 107, 714
TaiI ACGT 3 cut(s) 38, 327, 589
TasI AATT 7 cut(s) 149, 230, 265, 312, 544, 594, 638
TatI WGTACW 1 cut(s) 661
Tru1I TTAA 5 cut(s) 84, 329, 650, 681, 716
Tru9I TTAA 5 cut(s) 84, 329, 650, 681, 716
TscAI CASTG 2 cut(s) 421, 580
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 364, 643
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 421, 580
Vha464I CTTAAG 2 cut(s) 83, 680
VneI GTGCAC 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 347, 772
XapI RAATTY 3 cut(s) 230, 312, 544
XceI RCATGY 3 cut(s) 32, 50, 215
XspI CTAG 2 cut(s) 479, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.