Rroxscaffold_2G00090150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000103
Physical Location & Seq
Forward (+)
11947012 .. 11953333
6322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090150.1

Sequence Viewer

Length: 516 bp
ATGGGGCGGAACTCGGATGGACCGGTTGAGGTGGATAGTGGCGCCATGGATGCTACGGTGACGGAGGTGCATATCCGGCAAGGTTTGTCGGTCCGCATCGCTTGGGTGCCCAAATCAAGTGCTTGCAGATGGGTGTCCAGATCGAAGATGGCTTCTCCCAAATGTTTACGGGGATTTGGATTTGGGATCCGGGAGCCTCGGCTTAACTTCCTTGATCAATTTCCAAGTATTCATCCCACATCTGCCCTGCAGAGACCAAAATCTCTAGGACATGCCACTTCTTGTAAACCTACGTTCTACACCATCCCATGGTTTTCCAATTTAAGCCACAATGATTCACAACATCCCATGGTTTTGCAATTTAAGCAACAACAGATTCACAACATCCCATGTTTTGACAAGGAGGTTGATTTTCCTCTAGATGGTAAGCCCAAATTTGATCTCGACATTGAGCCTATTGATGATATATATGAAGAAGACGAGCCAATTCATGGCTTTGATCTACTCGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.34

Weight (kDa)

5.76

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 106
AccB7I CCANNNNNTGG 2 cut(s) 309, 491
AciI CCGC 2 cut(s) 7, 94
AclWI GGATC 2 cut(s) 181, 194
AcsI RAATTY 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 309, 422, 491
AgeI ACCGGT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 181, 194
Ama87I CYCGRG 1 cut(s) 506
ApoI RAATTY 1 cut(s) 434
AsiGI ACCGGT 1 cut(s) 22
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 20, 91
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 2 cut(s) 20, 91
BaeGI GKGCMC 1 cut(s) 111
BamHI GGATCC 1 cut(s) 186
BanI GGYRCC 2 cut(s) 41, 106
BbsI GAAGAC 1 cut(s) 483
BccI CCATC 5 cut(s) 11, 123, 142, 311, 416
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 266, 419
BfmI CTRYAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 2 cut(s) 20, 91
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 20, 91
BmiI GGNNCC 4 cut(s) 43, 108, 188, 195
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 40, 105
BpiI GAAGAC 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 4 cut(s) 45, 197, 308, 348
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 422, 491
Bse118I RCCGGY 1 cut(s) 22
BseDI CCNNGG 4 cut(s) 45, 197, 308, 348
BseGI GGATG 6 cut(s) 22, 55, 232, 303, 343, 384
BseLI CCNNNNNNNGG 3 cut(s) 309, 422, 491
BseSI GKGCMC 1 cut(s) 111
BshNI GGYRCC 2 cut(s) 41, 106
BshTI ACCGGT 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 3 cut(s) 23, 76, 190
BslI CCNNNNNNNGG 3 cut(s) 309, 422, 491
BsmAI GTCTC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 5 cut(s) 140, 186, 214, 439, 499
Bsp19I CCATGG 3 cut(s) 45, 308, 348
BspACI CCGC 2 cut(s) 7, 94
BspLI GGNNCC 4 cut(s) 43, 108, 188, 195
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 2 cut(s) 181, 194
BspT107I GGYRCC 2 cut(s) 41, 106
BspTNI GGTCTC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 4 cut(s) 45, 197, 308, 348
BssMI GATC 5 cut(s) 140, 186, 214, 439, 499
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 3 cut(s) 45, 308, 348
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 3 cut(s) 45, 308, 348
BstF5I GGATG 6 cut(s) 22, 55, 232, 303, 343, 384
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 5 cut(s) 143, 189, 217, 442, 502
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 5 cut(s) 140, 186, 214, 439, 499
BstMWI GCNNNNNNNGC 3 cut(s) 50, 76, 364
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BtgI CCRYGG 3 cut(s) 45, 308, 348
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 6 cut(s) 22, 55, 232, 303, 343, 384
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 20, 91
CpoI CGGWCCG 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 22
CspI CGGWCCG 1 cut(s) 91
CviAII CATG 6 cut(s) 46, 272, 309, 349, 390, 491
CviJI RGCY 9 cut(s) 152, 196, 202, 327, 430, 454, 484, 495, 513
CviKI_1 RGCY 9 cut(s) 152, 196, 202, 327, 430, 454, 484, 495, 513
DinI GGCGCC 1 cut(s) 43
DpnI GATC 5 cut(s) 142, 188, 216, 441, 501
DpnII GATC 5 cut(s) 140, 186, 214, 439, 499
EciI GGCGGA 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 45, 308, 348
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 20, 91
Eco88I CYCGRG 1 cut(s) 506
EcoT14I CCWWGG 3 cut(s) 45, 308, 348
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 45, 308, 348
FaeI CATG 6 cut(s) 49, 275, 312, 352, 393, 494
FatI CATG 6 cut(s) 45, 271, 308, 348, 389, 490
FbaI TGATCA 1 cut(s) 214
FokI GGATG 6 cut(s) 29, 62, 219, 290, 330, 371
FspBI CTAG 2 cut(s) 266, 419
GlaI GCGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 45
HapII CCGG 3 cut(s) 23, 76, 190
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 6 cut(s) 49, 275, 312, 352, 393, 494
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 335, 376
HpaII CCGG 3 cut(s) 23, 76, 190
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 167, 287
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 138, 419, 443
Hpy8I GTNNAC 2 cut(s) 167, 287
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 4 cut(s) 70, 126, 250, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 76, 364
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 6 cut(s) 49, 275, 312, 352, 393, 494
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 5 cut(s) 140, 186, 214, 439, 499
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 36, 89, 151, 203, 260
LweI GCATC 2 cut(s) 40, 105
MaeI CTAG 2 cut(s) 266, 419
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 58
MalI GATC 5 cut(s) 142, 188, 216, 441, 501
MboI GATC 5 cut(s) 140, 186, 214, 439, 499
MboII GAAGA 3 cut(s) 157, 485, 488
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 5 cut(s) 218, 319, 359, 434, 486
Mly113I GGCGCC 1 cut(s) 42
MnlI CCTC 6 cut(s) 22, 58, 207, 397, 426, 502
MseI TTAA 3 cut(s) 204, 323, 363
MspI CCGG 3 cut(s) 23, 76, 190
MspR9I CCNGG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 50, 76, 364
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 3 cut(s) 45, 308, 348
NdeII GATC 5 cut(s) 140, 186, 214, 439, 499
NlaIII CATG 6 cut(s) 49, 275, 312, 352, 393, 494
NlaIV GGNNCC 4 cut(s) 43, 108, 188, 195
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 506
PfeI GAWTC 2 cut(s) 335, 376
PflMI CCANNNNNTGG 2 cut(s) 309, 491
PfoI TCCNGGA 1 cut(s) 189
PinAI ACCGGT 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 43, 108, 188, 195
PspPI GGNCC 2 cut(s) 20, 91
PspXI VCTCGAGB 1 cut(s) 506
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 186
Rsr2I CGGWCCG 1 cut(s) 91
RsrII CGGWCCG 1 cut(s) 91
SaqAI TTAA 3 cut(s) 204, 323, 363
Sau3AI GATC 5 cut(s) 140, 186, 214, 439, 499
Sau96I GGNCC 2 cut(s) 20, 91
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 33, 69, 85, 292, 296, 408
SfaNI GCATC 2 cut(s) 40, 105
SfcI CTRYAG 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 506
SinI GGWCC 2 cut(s) 20, 91
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 5 cut(s) 218, 319, 359, 434, 486
SsiI CCGC 2 cut(s) 7, 94
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 266, 419
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 3 cut(s) 45, 308, 348
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 296
TaqI TCGA 3 cut(s) 143, 444, 507
TaqII GACCGA 1 cut(s) 79
TasI AATT 5 cut(s) 218, 319, 359, 434, 486
TfiI GAWTC 2 cut(s) 335, 376
Tru1I TTAA 3 cut(s) 204, 323, 363
Tru9I TTAA 3 cut(s) 204, 323, 363
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 221, 479, 486
TspGWI ACGGA 1 cut(s) 77
Van91I CCANNNNNTGG 2 cut(s) 309, 491
VpaK11BI GGWCC 2 cut(s) 20, 91
XapI RAATTY 1 cut(s) 434
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 506
XspI CTAG 2 cut(s) 266, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.