Rh7DG051800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000103
Physical Location & Seq
Reverse (-)
3968738 .. 3975038
6301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG051800.1

Sequence Viewer

Length: 405 bp
ATGTTAGAATTCTTCCAAACTTGCTTTGCGGATCCGAGCTTCCTTCAAACTGAGATTGAAGTTGCTAACATTAGTAGCTGTGTAGGTACTCAAAAGAGGTCGACAGCCAACCGCGTCAACCATATTGATTATCATCATGTGGTGGGAGAAGTGAACTCCTGGTTTGAAAATTTAGGCGAAAACTCAGATTGTCAACTCACTGAACTTCAATGTATAGAAATTGTTGCCATCTCTGATGCCAAAGCTGAACTAGATTTTATCAAATTGCTGCTGTTAAGTTCACCTGTACTGGAGTGCATGACTCTTAAGCCTTTTTCTGTGGATGGCTCTTTGGAACCGTTAAAACAGTTGATCCGATTTAGGTGTGCCTCGGTTCAGGCTGAGATAATCCTCTTGGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

4.55

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 29, 112
AclWI GGATC 3 cut(s) 26, 39, 346
AcsI RAATTY 2 cut(s) 8, 169
AfaI GTAC 2 cut(s) 88, 288
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 4 cut(s) 47, 59, 167, 209
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 3 cut(s) 39, 78, 245
AluI AGCT 3 cut(s) 39, 78, 245
AlwI GGATC 3 cut(s) 26, 39, 346
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 8, 169
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 1 cut(s) 397
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 236, 317
BciT130I CCWGG 1 cut(s) 160
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 3 cut(s) 33, 336, 399
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 3 cut(s) 42, 198, 372
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 114
Bsp143I GATC 2 cut(s) 31, 351
BspACI CCGC 2 cut(s) 29, 112
BspCNI CTCAG 3 cut(s) 43, 197, 373
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 33, 336, 399
BspPI GGATC 3 cut(s) 26, 39, 346
BspTI CTTAAG 1 cut(s) 305
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 31, 351
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 339, 348
BstAFI CTTAAG 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 51, 184, 381
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 2 cut(s) 34, 354
BstMBI GATC 2 cut(s) 31, 351
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 397
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 87, 287
CviAII CATG 2 cut(s) 137, 298
CviJI RGCY 7 cut(s) 39, 78, 107, 245, 310, 327, 380
CviKI_1 RGCY 7 cut(s) 39, 78, 107, 245, 310, 327, 380
CviQI GTAC 2 cut(s) 87, 287
DdeI CTNAG 3 cut(s) 51, 184, 381
DpnI GATC 2 cut(s) 33, 353
DpnII GATC 2 cut(s) 31, 351
Eco47I GGWCC 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 140, 301
FaiI YATR 4 cut(s) 123, 138, 215, 299
FatI CATG 2 cut(s) 136, 297
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 311
HgaI GACGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 140, 301
HincII GTYRAC 3 cut(s) 102, 118, 194
HindII GTYRAC 3 cut(s) 102, 118, 194
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 5 cut(s) 102, 118, 154, 194, 281
Hpy188I TCNGA 4 cut(s) 36, 187, 235, 356
Hpy8I GTNNAC 5 cut(s) 102, 118, 154, 194, 281
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 339, 348
HpyCH4V TGCA 1 cut(s) 297
HpyF3I CTNAG 3 cut(s) 51, 184, 381
Hsp92II CATG 2 cut(s) 140, 301
Kzo9I GATC 2 cut(s) 31, 351
LpnPI CCDG 5 cut(s) 145, 172, 275, 297, 362
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 251
MalI GATC 2 cut(s) 33, 353
MboI GATC 2 cut(s) 31, 351
MboII GAAGA 1 cut(s) 4
MflI RGATCY 1 cut(s) 31
MluCI AATT 4 cut(s) 8, 169, 219, 263
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 3 cut(s) 90, 379, 401
MseI TTAA 3 cut(s) 275, 306, 341
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 114
NdeII GATC 2 cut(s) 31, 351
NlaIII CATG 2 cut(s) 140, 301
NlaIV GGNNCC 3 cut(s) 33, 336, 399
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 33, 336, 399
PspPI GGNCC 1 cut(s) 397
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 88, 288
RsaNI GTAC 2 cut(s) 87, 287
SalI GTCGAC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 275, 306, 341
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 2 cut(s) 31, 351
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 160
SetI ASST 7 cut(s) 41, 80, 88, 101, 247, 286, 365
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 4 cut(s) 8, 169, 219, 263
SsiI CCGC 2 cut(s) 29, 112
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 339, 348
TaqI TCGA 1 cut(s) 101
TasI AATT 4 cut(s) 8, 169, 219, 263
TatI WGTACW 1 cut(s) 286
Tru1I TTAA 3 cut(s) 275, 306, 341
Tru9I TTAA 3 cut(s) 275, 306, 341
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 268
TspRI CASTG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 2 cut(s) 8, 169
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.