Rroxscaffold_7G00171980

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000103
Physical Location & Seq
Reverse (-)
12314849 .. 12316436
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171980.1

Sequence Viewer

Length: 1020 bp
ATGCGAGGACAAGTGTTTTGTCAAGCAAGTGGAGATATGCTTCCGCATCTTGTGTTTGGTTGTTTGTGCCGCTCGAACGTTGTTGATCATGTACTCTTAAATCACGTTGGCCCCATAAGCAAGTTCCGGCTTGTTCAAGGACTTATAGACATTGGAGATATTGATCGCTGGGTTCTTCACCTTTCAAGATATGATTCGCTTAAAGTTGAGTTGTTGTCTGCTAAAACCCCCTCGACATTCAAAGGGTTTAGGAGTTTGAAGTGCCTTGCATTTGCAAAGATTACCATGGCCCAAGATGTGTTGGAACATTTGATTGTTTGTTCTCCTCTGCTTGAGAGATTGACTCTGTGGGACTGTGACGGTTTCAGCCAACTCAAGATTGATGCACCGAATCTCCAATTTCTTGATGTTGTAGGTTCTTTTGAGGATGTGAGTATTGTGAATATGTTAAATGTTGTTGATGTTTCCATTTGTTTCAAGGAAAGTGGGATTCCTTGCAGTTCTGGCAGCTTGATCAAGTTTTTTGATGACCTGCATCGTCTTCAGAGGCTCCAAATTAACTGGTACTTTTTGAAGTATTTGGCTGGTGATGCCTTGCTAAAAAAGCTGCCTAAACCATGTTTACATCTGAAATTTCTTTGCTTTAATGATCTGGAAGATATTTTAACTGCTCTTTGCCTTGTAAGAAGCTCCCCTGCTCTAGAAAAGTTACAAATTTCTGCTATTGATTCCCCGTATTATCGACCTGATGTGGGAACAGTGAACTCTTGTTTGGATGACAATCACAGTTGCTCATTCACCCAACTGCGGCATGTGAAAATAACAGGGATCTCTGGTGTTGAAGCTGACCTAAATTTTATCAGATTTCTGCTTTTAAGTTCACCTGTGCTTGAGACGATGACTGTTTGCGCTAAGCATGAGCAGCTTGATTTTGGTATTGAACCTTTGGATCTAGTAAAACAGTTGCTTCGTTTGAGGCGTGCATCACCGAGTTTGGAGATGATCTATTTAGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

339

Amino Acids

38.2

Weight (kDa)

6.36

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 67 - 140 2e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 73 - 156 2.9e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 540
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 3 cut(s) 44, 70, 808
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 836, 957
AcsI RAATTY 3 cut(s) 632, 714, 853
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 2 cut(s) 93, 566
AfiI CCNNNNNNNGG 2 cut(s) 752, 807
AgsI TTSAA 8 cut(s) 137, 186, 241, 259, 478, 574, 842, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 5 cut(s) 510, 607, 690, 845, 925
AluI AGCT 5 cut(s) 510, 607, 690, 845, 925
Alw26I GTCTC 1 cut(s) 887
AlwI GGATC 2 cut(s) 836, 957
AoxI GGCC 2 cut(s) 109, 288
ApeKI GCWGC 3 cut(s) 507, 607, 922
ApoI RAATTY 3 cut(s) 632, 714, 853
ArsI GACNNNNNNTTYG 1 cut(s) 32
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 2 cut(s) 110, 289
AsuHPI GGTGA 5 cut(s) 170, 599, 790, 873, 978
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 519, 594, 934
BclI TGATCA 2 cut(s) 85, 513
BcoDI GTCTC 1 cut(s) 887
BfaI CTAG 2 cut(s) 701, 953
BfuAI ACCTGC 1 cut(s) 540
BisI GCNGC 5 cut(s) 70, 508, 608, 809, 923
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 5 cut(s) 71, 509, 609, 810, 924
BmgT120I GGNCC 2 cut(s) 110, 289
BmiI GGNNCC 2 cut(s) 112, 551
BmsI GCATC 5 cut(s) 55, 373, 544, 580, 992
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 328, 360
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 3 cut(s) 353, 359, 911
BsaBI GATNNNNATC 2 cut(s) 162, 780
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 752, 807
Bse1I ACTGG 1 cut(s) 566
Bse8I GATNNNNATC 2 cut(s) 162, 780
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 433, 781
BseJI GATNNNNATC 2 cut(s) 162, 780
BseLI CCNNNNNNNGG 2 cut(s) 752, 807
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 519, 594, 934
BseYI CCCAGC 1 cut(s) 168
BshFI GGCC 2 cut(s) 111, 290
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 752, 807
BsmAI GTCTC 1 cut(s) 887
BsmBI CGTCTC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 111, 290
Bsp143I GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
Bsp1720I GCTNAGC 1 cut(s) 912
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 3 cut(s) 44, 70, 808
BspANI GGCC 2 cut(s) 111, 290
BspLI GGNNCC 2 cut(s) 112, 551
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 2 cut(s) 836, 957
BsrBI CCGCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 6 cut(s) 356, 362, 760, 788, 904, 963
BstC8I GCNNGC 1 cut(s) 981
BstDEI CTNAG 1 cut(s) 912
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 433, 781
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 7 cut(s) 88, 166, 516, 652, 831, 952, 1005
BstMAI GTCTC 1 cut(s) 887
BstMBI GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
BstMWI GCNNNNNNNGC 5 cut(s) 117, 504, 590, 604, 922
BstNSI RCATGY 1 cut(s) 815
BstV1I GCAGC 3 cut(s) 519, 594, 934
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 2 cut(s) 828, 949
BstYI RGATCY 2 cut(s) 828, 949
BsuRI GGCC 2 cut(s) 111, 290
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 433, 781
BtsIMutI CAGTG 1 cut(s) 765
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 981
CfoI GCGC 1 cut(s) 911
Cfr13I GGNCC 2 cut(s) 110, 289
Csp6I GTAC 2 cut(s) 92, 565
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 5 cut(s) 89, 286, 618, 812, 917
CviQI GTAC 2 cut(s) 92, 565
DdeI CTNAG 1 cut(s) 912
DpnI GATC 7 cut(s) 87, 165, 515, 651, 830, 951, 1004
DpnII GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 887
FaeI CATG 5 cut(s) 92, 289, 621, 815, 920
FaqI GGGAC 1 cut(s) 365
FatI CATG 5 cut(s) 88, 285, 617, 811, 916
FbaI TGATCA 2 cut(s) 85, 513
Fnu4HI GCNGC 5 cut(s) 70, 508, 608, 809, 923
FokI GGATG 2 cut(s) 440, 788
Fsp4HI GCNGC 5 cut(s) 70, 508, 608, 809, 923
FspBI CTAG 2 cut(s) 701, 953
GlaI GCGC 1 cut(s) 910
GluI GCNGC 5 cut(s) 70, 508, 608, 809, 923
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 111, 290
HapII CCGG 1 cut(s) 127
HhaI GCGC 1 cut(s) 911
Hin1II CATG 5 cut(s) 92, 289, 621, 815, 920
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HinfI GANTC 5 cut(s) 194, 343, 391, 490, 728
HpaII CCGG 1 cut(s) 127
HphI GGTGA 5 cut(s) 170, 599, 790, 873, 978
Hpy166II GTNNAC 3 cut(s) 623, 763, 881
Hpy188I TCNGA 3 cut(s) 546, 630, 863
Hpy188III TCNNGA 5 cut(s) 186, 376, 404, 653, 701
Hpy8I GTNNAC 3 cut(s) 623, 763, 881
HpyCH4III ACNGT 6 cut(s) 356, 362, 760, 788, 904, 963
HpyCH4IV ACGT 2 cut(s) 78, 105
HpyCH4V TGCA 6 cut(s) 269, 275, 386, 498, 535, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 504, 590, 604, 922
HpyF3I CTNAG 1 cut(s) 912
HpySE526I ACGT 2 cut(s) 78, 105
Hsp92II CATG 5 cut(s) 92, 289, 621, 815, 920
HspAI GCGC 1 cut(s) 909
Ksp22I TGATCA 2 cut(s) 85, 513
Kzo9I GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
LmnI GCTCC 2 cut(s) 555, 695
Lsp1109I GCAGC 3 cut(s) 519, 594, 934
LweI GCATC 5 cut(s) 55, 373, 544, 580, 992
MaeI CTAG 2 cut(s) 701, 953
MaeII ACGT 2 cut(s) 78, 105
MaeIII GTNAC 2 cut(s) 356, 708
MalI GATC 7 cut(s) 87, 165, 515, 651, 830, 951, 1004
MbiI CCGCTC 1 cut(s) 72
MboI GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
MboII GAAGA 3 cut(s) 167, 533, 668
MflI RGATCY 2 cut(s) 828, 949
MluCI AATT 5 cut(s) 398, 555, 632, 714, 853
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 5 cut(s) 241, 336, 418, 540, 969
MseI TTAA 7 cut(s) 98, 201, 449, 558, 645, 665, 875
MspI CCGG 1 cut(s) 127
MwoI GCNNNNNNNGC 5 cut(s) 117, 504, 590, 604, 922
NcoI CCATGG 1 cut(s) 285
NdeII GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
NlaIII CATG 5 cut(s) 92, 289, 621, 815, 920
NlaIV GGNNCC 2 cut(s) 112, 551
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 1 cut(s) 815
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PfeI GAWTC 4 cut(s) 194, 391, 490, 728
PkrI GCNGC 5 cut(s) 71, 509, 609, 810, 924
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 112, 551
PspPI GGNCC 2 cut(s) 110, 289
PsuI RGATCY 2 cut(s) 828, 949
RsaI GTAC 2 cut(s) 93, 566
RsaNI GTAC 2 cut(s) 92, 565
SaqAI TTAA 7 cut(s) 98, 201, 449, 558, 645, 665, 875
SatI GCNGC 5 cut(s) 70, 508, 608, 809, 923
Sau3AI GATC 7 cut(s) 85, 163, 513, 649, 828, 949, 1002
Sau96I GGNCC 2 cut(s) 110, 289
SchI GAGTC 1 cut(s) 337
SfaNI GCATC 5 cut(s) 55, 373, 544, 580, 992
SmlI CTYRAG 3 cut(s) 332, 374, 890
SmoI CTYRAG 3 cut(s) 332, 374, 890
Sse9I AATT 5 cut(s) 398, 555, 632, 714, 853
SsiI CCGC 3 cut(s) 44, 70, 808
SspMI CTAG 2 cut(s) 701, 953
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 6 cut(s) 356, 362, 760, 788, 904, 963
TaiI ACGT 2 cut(s) 81, 108
TaqI TCGA 3 cut(s) 74, 233, 742
TasI AATT 5 cut(s) 398, 555, 632, 714, 853
TatI WGTACW 1 cut(s) 91
TauI GCSGC 2 cut(s) 72, 811
TfiI GAWTC 4 cut(s) 194, 391, 490, 728
Tru1I TTAA 7 cut(s) 98, 201, 449, 558, 645, 665, 875
Tru9I TTAA 7 cut(s) 98, 201, 449, 558, 645, 665, 875
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 3 cut(s) 507, 607, 922
Tsp45I GTSAC 1 cut(s) 356
TspRI CASTG 1 cut(s) 765
XapI RAATTY 3 cut(s) 632, 714, 853
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 815
XspI CTAG 2 cut(s) 701, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.