RchiOBHm_Chr6g0248921

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000103
Physical Location & Seq
Forward (+)
4809616 .. 4810194
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22313

Sequence Viewer

Length: 579 bp
ATGGATATTGAGTTTGACAATCTCAGTGACTTACCAAGTGATGTTACGGAAAAGATTTTGTCATTTTTGCCAATGAAAGAGGCAGTGAGGACAAGTATATTATCAAGCAAGTGGAGGTACAAATGGGCTATCCTTCCAGATCTTGTGTTTGATGAACTGGGTTTCCCAGGAGTACTTTATAAGCATGACAAATTAGTGAAAATGGTTGATCATGTGCTCTTCCTTCTCATTGGTCCAATAAACAAGGTCAAGCTTTCTCATAAAGGTCTTAATGGCACCGCAGATATTGATAGATGGATTCTTCATCTATCAAGAAATTCTATGAGAGAGTTCATATTTAGGTTTTGGAAAAAGCCTGAATACAAGATGCCTTCATGTTTGTTTTCCTGTCAAGATTTGGTTCATTTGGAATTCTGTAATTGTTTGCTAAAACCTCCGCGCACATTCAAGGGCTTCAAGAGTCTGAAGAAACTTGAAATTGAAAGTGTTACCCTGACCCAAGATGAGTTTGAAAATCTAGTTGTTTGTTGTCCTCTGCTGAAATATTTGACCATGATGTTTCACCAAGCTCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

192

Amino Acids

22.52

Weight (kDa)

8.17

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 43 4.5e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 93 - 186 3.8e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 96 - 188 2.5e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 1 cut(s) 439
AciI CCGC 2 cut(s) 279, 437
AcsI RAATTY 2 cut(s) 316, 410
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 2 cut(s) 119, 174
AgsI TTSAA 5 cut(s) 448, 457, 476, 482, 512
AjnI CCWGG 1 cut(s) 166
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 253, 569
AluI AGCT 2 cut(s) 253, 569
Alw21I GWGCWC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 316, 410
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 518
BglII AGATCT 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 139, 208
BspACI CCGC 2 cut(s) 279, 437
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 139, 208
Bst2UI CCWGG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 2 cut(s) 142, 211
BstMBI GATC 2 cut(s) 139, 208
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 31, 90
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 118, 173
CviAII CATG 4 cut(s) 185, 212, 375, 553
CviJI RGCY 5 cut(s) 128, 253, 355, 453, 569
CviKI_1 RGCY 5 cut(s) 128, 253, 355, 453, 569
CviQI GTAC 2 cut(s) 118, 173
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 141, 210
DpnII GATC 2 cut(s) 139, 208
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 4 cut(s) 188, 215, 378, 556
FaiI YATR 9 cut(s) 98, 180, 186, 213, 261, 323, 335, 376, 554
FatI CATG 4 cut(s) 184, 211, 374, 552
FbaI TGATCA 1 cut(s) 208
FspBI CTAG 1 cut(s) 518
GlaI GCGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 441
Hin1II CATG 4 cut(s) 188, 215, 378, 556
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 298, 460
HphI GGTGA 1 cut(s) 554
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 5 cut(s) 137, 312, 392, 457, 572
HpyAV CCTTC 3 cut(s) 143, 233, 381
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 4 cut(s) 188, 215, 378, 556
HspAI GCGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 139, 208
LguI GCTCTTC 1 cut(s) 224
LpnPI CCDG 7 cut(s) 143, 150, 153, 180, 369, 400, 506
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 26, 43, 487
MalI GATC 2 cut(s) 141, 210
MboI GATC 2 cut(s) 139, 208
MboII GAAGA 3 cut(s) 211, 293, 478
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 5 cut(s) 191, 316, 410, 418, 477
MlyI GAGTC 1 cut(s) 469
MnlI CCTC 5 cut(s) 73, 81, 108, 444, 543
MseI TTAA 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 439
NdeII GATC 2 cut(s) 139, 208
NlaIII CATG 4 cut(s) 188, 215, 378, 556
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 298
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 119, 174
RsaNI GTAC 2 cut(s) 118, 173
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 2 cut(s) 139, 208
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 174
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 119, 249, 255, 268, 344, 436, 571
SfaNI GCATC 1 cut(s) 357
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 5 cut(s) 191, 316, 410, 418, 477
SsiI CCGC 2 cut(s) 279, 437
SspI AATATT 1 cut(s) 545
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 166
TasI AATT 5 cut(s) 191, 316, 410, 418, 477
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 31, 90
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 6 cut(s) 89, 168, 293, 322, 363, 392
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 2 cut(s) 31, 90
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 316, 410
XspI CTAG 1 cut(s) 518
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.