Rorug05G0533100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000103
Physical Location & Seq
Reverse (-)
72112522 .. 72113283
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0533100.1

Sequence Viewer

Length: 762 bp
ATGAGGGAAGATCAGTTTGGATCTTTGCCACCCCCTCCCGGCAGCTCCAAGTCAAAGCAGAGCAGCAGGGCCAGCGCACGCCACGTTGCCTTCTCGGAAACTTCCACTCCAAGCACCAAGCCTGATGGAGCCTTCCTCCCCCCACCAGATTTAGACGGTGAACGTCCAAAACGCTTCCGTCCACGTGCCTATGCATGCTGTGCATGGGGTTGCATGTTCATTTTCGCCTTCGTCCTCCTCGCCCTCATCTTAGGTTTTGTATTCATCTCCATCTTCCATTCTTACCTACCTGAAATCAAGGTCCGGAGGTTCAATGCAACGAGGATCGACTTTGGCAACGCTCAAAATAAGCAGAAGGTGAGTTTGAAGGGAAAAGTGGATTTGCTAGTGGAGTTTAATAACAAGAACGAGAAAACCGAGCTCAAATTCGGGTTGTTCAAAGTCAGTGCTTCTGCTGCTCATGTCGATCTGGGTAAGACCGAGTTTCAGCCATTTACTCAGCCAAAGAAATCCACAAAATCACTGAATGCAACCATTGGGGTTAACCATCCTGGGGTAGATAAAGAAGACGCAGACCTCCTGAAACAAGACATTCAAAACCATGAAGTTGATCTGACACTGACCTTGGTCGGAAGTGTTAGCTTCCCAATCTCAGGGATTATGATGAATAAGATTCCGATCATGGCGTCATGTGATTGCAAGCAAACGGAAGTTGATTTTGGGAAGAATGCAAAGTGTGATTATCGGATTTTCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

253

Amino Acids

28.08

Weight (kDa)

9.18

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 303
AclWI GGATC 2 cut(s) 28, 332
AcsI RAATTY 1 cut(s) 425
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 686
AfiI CCNNNNNNNGG 3 cut(s) 38, 553, 653
AgsI TTSAA 4 cut(s) 313, 367, 439, 596
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 702, 734
AluBI AGCT 3 cut(s) 45, 421, 642
AluI AGCT 3 cut(s) 45, 421, 642
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 2 cut(s) 28, 332
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 42, 63, 455
ApoI RAATTY 1 cut(s) 425
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 69, 301
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 170, 370
AvaII GGWCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 54, 75, 442
BccI CCATC 3 cut(s) 119, 278, 555
BciT130I CCWGG 1 cut(s) 552
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 386
BisI GCNGC 3 cut(s) 43, 64, 456
BlsI GCNGC 3 cut(s) 44, 65, 457
Bme1390I CCNGG 2 cut(s) 39, 552
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 69, 301
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 39, 552
BoxI GACNNNNGTC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 573
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 551, 624
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 553, 653
Bse8I GATNNNNATC 1 cut(s) 677
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 551, 624
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 3 cut(s) 38, 553, 653
BseMII CTCAG 2 cut(s) 512, 666
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 54, 75, 442
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 2 cut(s) 39, 304
BslI CCNNNNNNNGG 3 cut(s) 38, 553, 653
BsmI GAATGC 2 cut(s) 532, 733
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 511, 665
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 28, 332
BssECI CCNNGG 2 cut(s) 551, 624
BssMI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BssNI GRCGYC 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 73, 79, 196, 701
BstDEI CTNAG 3 cut(s) 250, 498, 652
BstF5I GGATG 1 cut(s) 547
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 6 cut(s) 13, 23, 327, 469, 613, 681
BstMBI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BstMWI GCNNNNNNNGC 3 cut(s) 72, 200, 455
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 198, 217
BstPAI GACNNNNGTC 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 37, 550
BstV1I GCAGC 3 cut(s) 54, 75, 442
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 3 cut(s) 451, 521, 617
Cac8I GCNNGC 4 cut(s) 73, 79, 196, 701
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 69, 301
CseI GACGC 2 cut(s) 578, 675
CviAII CATG 7 cut(s) 195, 204, 214, 461, 602, 682, 690
CviJI RGCY 8 cut(s) 45, 71, 121, 131, 421, 490, 502, 642
CviKI_1 RGCY 8 cut(s) 45, 71, 121, 131, 421, 490, 502, 642
DdeI CTNAG 3 cut(s) 250, 498, 652
DpnI GATC 6 cut(s) 12, 22, 326, 468, 612, 680
DpnII GATC 6 cut(s) 10, 20, 324, 466, 610, 678
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 421
Eco72I CACGTG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 624
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
FaiI YATR 9 cut(s) 192, 196, 205, 215, 462, 603, 662, 683, 691
FatI CATG 7 cut(s) 194, 203, 213, 460, 601, 681, 689
Fnu4HI GCNGC 3 cut(s) 43, 64, 456
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 43, 64, 456
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 43, 64, 456
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 39, 304
HgaI GACGC 2 cut(s) 578, 675
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 686
Hin1II CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 673
HpaI GTTAAC 1 cut(s) 544
HpaII CCGG 2 cut(s) 39, 304
HphI GGTGA 2 cut(s) 170, 370
Hpy166II GTNNAC 3 cut(s) 161, 182, 544
Hpy188I TCNGA 5 cut(s) 97, 615, 632, 678, 747
Hpy188III TCNNGA 2 cut(s) 304, 580
Hpy8I GTNNAC 3 cut(s) 161, 182, 544
HpyAV CCTTC 5 cut(s) 100, 142, 238, 349, 361
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 3 cut(s) 84, 163, 184
HpyCH4V TGCA 7 cut(s) 194, 203, 213, 317, 530, 699, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 200, 455
HpyF3I CTNAG 3 cut(s) 250, 498, 652
HpySE526I ACGT 3 cut(s) 84, 163, 184
Hsp92I GRCGYC 1 cut(s) 686
Hsp92II CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 6 cut(s) 10, 20, 324, 466, 610, 678
LmnI GCTCC 2 cut(s) 50, 128
Lsp1109I GCAGC 3 cut(s) 54, 75, 442
MaeI CTAG 1 cut(s) 386
MaeII ACGT 3 cut(s) 84, 163, 184
MalI GATC 6 cut(s) 12, 22, 326, 468, 612, 680
MboI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
MboII GAAGA 4 cut(s) 20, 265, 578, 736
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 8 cut(s) 45, 146, 245, 248, 254, 300, 315, 587
Mph1103I ATGCAT 1 cut(s) 196
MroI TCCGGA 1 cut(s) 303
MseI TTAA 2 cut(s) 396, 543
MspI CCGG 2 cut(s) 39, 304
MspR9I CCNGG 2 cut(s) 39, 552
Mva1269I GAATGC 2 cut(s) 532, 733
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 72, 200, 455
NciI CCSGG 1 cut(s) 39
NdeII GATC 6 cut(s) 10, 20, 324, 466, 610, 678
NlaIII CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
NlaIV GGNNCC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 2 cut(s) 198, 217
PaeI GCATGC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 2 cut(s) 532, 733
PfeI GAWTC 1 cut(s) 673
PkrI GCNGC 3 cut(s) 44, 65, 457
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 550
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 69, 301
PsuI RGATCY 1 cut(s) 20
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 396, 543
SatI GCNGC 3 cut(s) 43, 64, 456
Sau3AI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
Sau96I GGNCC 2 cut(s) 69, 301
ScrFI CCNGG 2 cut(s) 39, 552
SduI GDGCHC 1 cut(s) 423
SinI GGWCC 1 cut(s) 301
SphI GCATGC 1 cut(s) 198
Sse9I AATT 1 cut(s) 425
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 37, 550
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 3 cut(s) 87, 166, 187
TaqI TCGA 2 cut(s) 327, 465
TaqII GACCGA 1 cut(s) 494
TasI AATT 1 cut(s) 425
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 2 cut(s) 396, 543
Tru9I TTAA 2 cut(s) 396, 543
TscAI CASTG 3 cut(s) 451, 528, 624
TseI GCWGC 3 cut(s) 42, 63, 455
TspDTI ATGAA 4 cut(s) 208, 253, 618, 680
TspGWI ACGGA 2 cut(s) 167, 722
TspRI CASTG 3 cut(s) 451, 528, 624
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 425
XceI RCATGY 2 cut(s) 198, 217
XspI CTAG 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.