Rorug06G0029400

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
3479079 .. 3480650
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0029400.1

Sequence Viewer

Length: 399 bp
ATGAGAGAGGAGAAGAGAGTTGTAAACCGTCCGATTGAAATCGGACGGTTTGATTTTAAGTTCTCGGGATTTCCAGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGAGGCGGGCGGCGGAGGAGGAGGAGAAGAAGAGGTGGGCGGAGGCCAAGGCCAAGGAGGAGGCCAAGGCGGAGCGCAAGGTGGTGGAGGAGAAGAAGGACAAGGAGGAGGAGGAGGAGAGTGGAAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAATACTCATGGACCCAAAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAGTCAAGGGATATTGTTTATGAGGCAAAGAAGAGAACCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

15.55

Weight (kDa)

9.44

Isoelectric Point (pI)

73.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 104, 133, 137, 140, 167, 197
AclWI GGATC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 38, 100
AhdI GACNNNNNGTC 1 cut(s) 309
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 3 cut(s) 171, 177, 189
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 174, 180, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 174, 180, 192
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 338
BshFI GGCC 3 cut(s) 173, 179, 191
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 3 cut(s) 173, 179, 191
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 6 cut(s) 104, 133, 137, 140, 167, 197
BspANI GGCC 3 cut(s) 173, 179, 191
BspLI GGNNCC 1 cut(s) 305
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 174, 180, 192
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 3 cut(s) 174, 180, 192
Bst4CI ACNGT 3 cut(s) 29, 48, 394
Bst6I CTCTTC 4 cut(s) 8, 122, 152, 380
BstC8I GCNNGC 2 cut(s) 135, 345
BstDEI CTNAG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 3 cut(s) 173, 179, 191
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 135, 345
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 303
CviAII CATG 1 cut(s) 300
CviJI RGCY 4 cut(s) 173, 179, 191, 280
CviKI_1 RGCY 4 cut(s) 173, 179, 191, 280
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 309
Eam1104I CTCTTC 4 cut(s) 8, 122, 152, 380
Eam1105I GACNNNNNGTC 1 cut(s) 309
EarI CTCTTC 4 cut(s) 8, 122, 152, 380
EciI GGCGGA 3 cut(s) 155, 182, 212
Eco130I CCWWGG 3 cut(s) 174, 180, 192
Eco47I GGWCC 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 64
EcoT14I CCWWGG 3 cut(s) 174, 180, 192
ErhI CCWWGG 3 cut(s) 174, 180, 192
FaeI CATG 1 cut(s) 303
FaiI YATR 4 cut(s) 287, 301, 329, 375
FatI CATG 1 cut(s) 299
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 173, 179, 191
HhaI GCGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 303
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 33, 44
Hpy188III TCNNGA 2 cut(s) 66, 74
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 109, 217
HpyCH4III ACNGT 3 cut(s) 29, 48, 394
HpyCH4V TGCA 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 1 cut(s) 303
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 71, 87, 302, 333, 351, 357
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 7 cut(s) 25, 136, 139, 166, 169, 232, 397
MflI RGATCY 1 cut(s) 82
MseI TTAA 2 cut(s) 57, 324
MslI CAYNNNNRTG 1 cut(s) 338
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 57, 324
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 303
SetI ASST 3 cut(s) 164, 210, 324
SfcI CTRYAG 1 cut(s) 314
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 338
SsiI CCGC 6 cut(s) 104, 133, 137, 140, 167, 197
StyI CCWWGG 3 cut(s) 174, 180, 192
TaaI ACNGT 3 cut(s) 29, 48, 394
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 57, 324
Tru9I TTAA 2 cut(s) 57, 324
TscAI CASTG 1 cut(s) 345
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.