Rroxscaffold_2G00120650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000103
Physical Location & Seq
Forward (+)
52955684 .. 52959103
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120650.1

Sequence Viewer

Length: 279 bp
ATGGCGTGGTTGTGGCGTGCTGATTCAGCGTGCACCGGAACAGTTGCACGTGTGACCGCTGTACAAAGAGATCGAGCCGGGCCTAACTTTGGTCAACCTGCTGGACTTTCAGCAGCCACTTCAACATCGGTGAAGACGCCGAAAGTCCTTGCAACAAAGGCAACAAAGGCAAGAGAACCCAATGGCCGAGACAGTTCCTTCCTCGGCCCACAGTCACTTGAAAGAAGTCAGATCAAGCGCAAATCTTATCAAAACCTCACTTGGCCAATTGGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.96

Weight (kDa)

11.26

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 2 cut(s) 57, 274
AcoI YGGCCR 3 cut(s) 184, 263, 271
AcvI CACGTG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 123, 221
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 31
AoxI GGCC 5 cut(s) 80, 184, 205, 263, 271
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 80, 206
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 265
BbrPI CACGTG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 2 cut(s) 114, 274
BlsI GCNGC 2 cut(s) 115, 275
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 80, 206
BmrFI CCNGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 5 cut(s) 82, 186, 207, 265, 273
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 36, 78
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 5 cut(s) 82, 186, 207, 265, 273
Bsp1286I GDGCHC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 70, 231
BspACI CCGC 2 cut(s) 57, 274
BspANI GGCC 5 cut(s) 82, 186, 207, 265, 273
BspMI ACCTGC 1 cut(s) 106
BsrGI TGTACA 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 70, 231
BssNI GRCGYC 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 43, 194, 213
BstACI GRCGYC 1 cut(s) 137
BstAUI TGTACA 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 18, 31
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 73, 234
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 70, 231
BstMWI GCNNNNNNNGC 3 cut(s) 26, 158, 167
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 5 cut(s) 82, 186, 207, 265, 273
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 18, 31
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 80, 206
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 62
CviJI RGCY 7 cut(s) 77, 82, 116, 186, 207, 265, 273
CviKI_1 RGCY 7 cut(s) 77, 82, 116, 186, 207, 265, 273
CviQI GTAC 1 cut(s) 62
DpnI GATC 2 cut(s) 72, 233
DpnII GATC 2 cut(s) 70, 231
EaeI YGGCCR 3 cut(s) 184, 263, 271
Eco72I CACGTG 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 114, 274
Fsp4HI GCNGC 2 cut(s) 114, 274
FspBI CTAG 1 cut(s) 277
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 114, 274
HaeIII GGCC 5 cut(s) 82, 186, 207, 265, 273
HapII CCGG 2 cut(s) 36, 78
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HinfI GANTC 1 cut(s) 23
HpaII CCGG 2 cut(s) 36, 78
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 33, 95
Hpy188I TCNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 33, 95
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 43, 194, 213
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 33, 47, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 158, 167
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 70, 231
LpnPI CCDG 4 cut(s) 49, 87, 91, 111
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 1 cut(s) 277
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 52, 213
MalI GATC 2 cut(s) 72, 233
MboI GATC 2 cut(s) 70, 231
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 265
MnlI CCTC 2 cut(s) 212, 266
Mox20I TGGCCA 1 cut(s) 265
MscI TGGCCA 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 36, 78
MspR9I CCNGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 26, 158, 167
NciI CCSGG 1 cut(s) 79
NdeII GATC 2 cut(s) 70, 231
NmeAIII GCCGAG 2 cut(s) 183, 212
NmuCI GTSAC 2 cut(s) 52, 213
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 115, 275
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 50
PspCI CACGTG 1 cut(s) 50
PspPI GGNCC 2 cut(s) 80, 206
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SatI GCNGC 2 cut(s) 114, 274
Sau3AI GATC 2 cut(s) 70, 231
Sau96I GGNCC 2 cut(s) 80, 206
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 35
SetI ASST 3 cut(s) 52, 100, 258
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 57, 274
SspMI CTAG 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 43, 194, 213
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 52, 213
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 52, 213
VneI GTGCAC 1 cut(s) 31
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.