pycom05g14980

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000103
Physical Location & Seq
Forward (+)
18551189 .. 18551746
558 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14980.1

Sequence Viewer

Length: 558 bp
ATGGAGTTGGACAGAATTAGCAACTTACCAAGTGACGTTATAAACAAAATTTTGTCACATTTGCCAATTAGGGAGGCAGTTAGAACAAGTGTATTATCAAGCAAATGGAGGAACAAATCGGCTATGCTTACTAATCTTTTGTTTGATGAACGGTGCACCTCAGATCCAAACCCTAAAACCTTTGCAGGCGTTGTTGATCATGTACTCTTGGGTCACATTAGCCCCATACACACGTTCAGGATCACTCATTCCCGACCTCAAGTCGGTAGAGATATTGATCGATGGATTCTTCATCTGTCAAGAAACTCTATCAAAGAGTTGTTGCTTAATATCAAATGTAGTGGGCATCGCTACAAGATGCCTTCATGTTTGTTTTCTTGTCAAGATCTCATTTATTTAGCGTTGTATAATTGTTTGCTACAACCTCCATCCAAATTCCAAGGATTCAGGAGTTTGAAGATTTGTGGTCTTGTTAATGTTACCTTGGACCAAGATGGGTTTGAGAATCTGATTGTCTGCTGCCCTCTTCTTGAGAGATTTAACATTGTGGCGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

186

Amino Acids

21.11

Weight (kDa)

8.99

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 40 2.6e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 89 - 183 9.2e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 92 - 183 6.1e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AclWI GGATC 2 cut(s) 158, 248
AcsI RAATTY 2 cut(s) 48, 434
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 457
AhdI GACNNNNNGTC 1 cut(s) 260
Alw21I GWGCWC 1 cut(s) 158
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 2 cut(s) 158, 248
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 2 cut(s) 48, 434
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 1 cut(s) 487
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 506
BccI CCATC 3 cut(s) 276, 436, 488
BclI TGATCA 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 554
BglII AGATCT 1 cut(s) 385
BisI GCNGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 487
BmsI GCATC 2 cut(s) 348, 355
BpuEI CTTGAG 2 cut(s) 243, 551
Bsa29I ATCGAT 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 439, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 439, 483
BseGI GGATG 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 506
BshVI ATCGAT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 5 cut(s) 163, 196, 240, 277, 385
BspCNI CTCAG 1 cut(s) 173
BspDI ATCGAT 1 cut(s) 280
BspPI GGATC 2 cut(s) 158, 248
BssECI CCNNGG 2 cut(s) 439, 483
BssMI GATC 5 cut(s) 163, 196, 240, 277, 385
BssT1I CCWWGG 2 cut(s) 439, 483
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 5 cut(s) 166, 199, 243, 280, 388
BstMBI GATC 5 cut(s) 163, 196, 240, 277, 385
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 506
BstX2I RGATCY 2 cut(s) 163, 385
BstYI RGATCY 2 cut(s) 163, 385
Bsu15I ATCGAT 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 487
ClaI ATCGAT 1 cut(s) 280
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 2 cut(s) 200, 366
CviJI RGCY 2 cut(s) 122, 222
CviKI_1 RGCY 2 cut(s) 122, 222
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 160
DpnI GATC 5 cut(s) 165, 198, 242, 279, 387
DpnII GATC 5 cut(s) 163, 196, 240, 277, 385
DriI GACNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 531
Eam1105I GACNNNNNGTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 439, 483
Eco47I GGWCC 1 cut(s) 487
EcoT14I CCWWGG 2 cut(s) 439, 483
ErhI CCWWGG 2 cut(s) 439, 483
FaeI CATG 2 cut(s) 203, 369
FaiI YATR 6 cut(s) 41, 125, 201, 227, 367, 408
FatI CATG 2 cut(s) 199, 365
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 1 cut(s) 520
GlaI GCGC 1 cut(s) 552
GluI GCNGC 1 cut(s) 520
HaeII RGCGCY 1 cut(s) 554
HhaI GCGC 1 cut(s) 553
Hin1II CATG 2 cut(s) 203, 369
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HinfI GANTC 3 cut(s) 286, 444, 505
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 163, 510
Hpy188III TCNNGA 6 cut(s) 238, 252, 300, 383, 448, 530
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 36, 233
HpyCH4V TGCA 2 cut(s) 156, 185
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 36, 233
Hsp92II CATG 2 cut(s) 203, 369
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 163, 196, 240, 277, 385
LpnPI CCDG 3 cut(s) 171, 223, 433
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 2 cut(s) 348, 355
MaeII ACGT 2 cut(s) 36, 233
MaeIII GTNAC 4 cut(s) 32, 54, 212, 478
MalI GATC 5 cut(s) 165, 198, 242, 279, 387
MboI GATC 5 cut(s) 163, 196, 240, 277, 385
MboII GAAGA 3 cut(s) 281, 469, 518
MflI RGATCY 2 cut(s) 163, 385
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 15, 48, 66, 409, 434
MnlI CCTC 6 cut(s) 67, 102, 169, 267, 435, 534
MseI TTAA 3 cut(s) 327, 474, 540
NdeII GATC 5 cut(s) 163, 196, 240, 277, 385
NlaIII CATG 2 cut(s) 203, 369
NmuCI GTSAC 3 cut(s) 32, 54, 212
PfeI GAWTC 3 cut(s) 286, 444, 505
PkrI GCNGC 1 cut(s) 521
PsiI TTATAA 1 cut(s) 41
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 2 cut(s) 163, 385
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 327, 474, 540
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 5 cut(s) 163, 196, 240, 277, 385
Sau96I GGNCC 1 cut(s) 487
SduI GDGCHC 1 cut(s) 158
SetI ASST 7 cut(s) 39, 161, 182, 236, 259, 427, 485
SfaNI GCATC 2 cut(s) 348, 355
SinI GGWCC 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 258, 530
SmoI CTYRAG 2 cut(s) 258, 530
Sse9I AATT 5 cut(s) 15, 48, 66, 409, 434
StyI CCWWGG 2 cut(s) 439, 483
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 2 cut(s) 39, 236
TaqI TCGA 1 cut(s) 280
TasI AATT 5 cut(s) 15, 48, 66, 409, 434
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 3 cut(s) 286, 444, 505
Tru1I TTAA 3 cut(s) 327, 474, 540
Tru9I TTAA 3 cut(s) 327, 474, 540
TseFI GTSAC 3 cut(s) 32, 54, 212
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 3 cut(s) 32, 54, 212
TspDTI ATGAA 3 cut(s) 162, 281, 354
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 48, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.