RchiOBHm_Chr6g0296021

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000103
Physical Location & Seq
Forward (+)
57808059 .. 57808680
622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26569

Sequence Viewer

Length: 603 bp
ATGATTCTTTGTTGTCCTCTGCTTGAGAGATTCACTTTGACCAACTGTGACGGTTTCAGCCAGCTCAAGATTGATGCACCAAATCTCCAATTCCTTGACGTTTTCGGTTCGTTTGAGGATTTTAGTGTTGTGAATACGTTAAATCTTGCTGTTGTTTCTATTGGTTTTGTCGACTCACCAGTCCCTTGCAGTTCCAGCAAATTGATCAAGTTTTTTGATGACCTGTCTTGTATTCAGGCGCTCCAAATTAAGTGGGGCTTTTTGAAGTACTTGGCTGCTGGTGCCTTGCGAGAAAAGCTGCCCAAACCATGTCTGCACCTGAAATTTCTTGAAAGGAACGTGTGCTTAGATGATCGGGAGGATATTTTAACTGCTCTTTGCCTTCTGAGAAGCTCCCCTGCTCTAGAAGAACTAGAAATTCTCACAAATGATTTCTCAACTAATGAAGCTAATGTAGGTACAGTGAACTCTTGCTTGGATGACAACCGTAGTTATTCATTCACCCAACTGCGACATGTGAAAATATACAACATCTCTGGTCTTGAAGGTGAACTAGATTTTATCCAATTTCTTCTTTTATGTTCGCAATTTTCTTCGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

200

Amino Acids

22.44

Weight (kDa)

4.65

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 8 - 177 3.8e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 171
AcsI RAATTY 2 cut(s) 323, 417
AfaI GTAC 2 cut(s) 269, 460
AflIII ACRYGT 2 cut(s) 339, 514
AgsI TTSAA 3 cut(s) 265, 332, 545
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 4 cut(s) 64, 298, 393, 449
AluI AGCT 4 cut(s) 64, 298, 393, 449
ApeKI GCWGC 2 cut(s) 275, 298
ApoI RAATTY 2 cut(s) 323, 417
AspLEI GCGC 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 168, 493, 560
BanI GGYRCC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 262, 285
BclI TGATCA 1 cut(s) 204
BfaI CTAG 3 cut(s) 404, 413, 554
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 2 cut(s) 276, 299
BlsI GCNGC 2 cut(s) 277, 300
BmcAI AGTACT 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 44, 50
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 262, 285
BsgI GTGCAG 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 204, 352
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 179
BssMI GATC 2 cut(s) 204, 352
Bst4CI ACNGT 4 cut(s) 47, 53, 463, 488
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 346, 386
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 207, 355
BstMBI GATC 2 cut(s) 204, 352
BstMWI GCNNNNNNNGC 3 cut(s) 195, 281, 295
BstNSI RCATGY 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 262, 285
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 268, 459
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 2 cut(s) 309, 515
CviJI RGCY 7 cut(s) 60, 64, 258, 275, 298, 393, 449
CviKI_1 RGCY 7 cut(s) 60, 64, 258, 275, 298, 393, 449
CviQI GTAC 2 cut(s) 268, 459
DdeI CTNAG 2 cut(s) 346, 386
DpnI GATC 2 cut(s) 206, 354
DpnII GATC 2 cut(s) 204, 352
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
FaeI CATG 2 cut(s) 312, 518
FaiI YATR 4 cut(s) 310, 516, 526, 580
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 308, 514
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 276, 299
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 2 cut(s) 276, 299
FspBI CTAG 3 cut(s) 404, 413, 554
GlaI GCGC 1 cut(s) 240
GluI GCNGC 2 cut(s) 276, 299
HaeII RGCGCY 1 cut(s) 242
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 312, 518
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 4, 30, 173
HphI GGTGA 3 cut(s) 168, 493, 560
Hpy166II GTNNAC 3 cut(s) 172, 466, 551
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 5 cut(s) 67, 329, 356, 404, 542
Hpy8I GTNNAC 3 cut(s) 172, 466, 551
HpyAV CCTTC 2 cut(s) 392, 539
HpyCH4III ACNGT 4 cut(s) 47, 53, 463, 488
HpyCH4IV ACGT 3 cut(s) 99, 137, 339
HpyCH4V TGCA 3 cut(s) 77, 189, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 281, 295
HpyF3I CTNAG 2 cut(s) 346, 386
HpySE526I ACGT 3 cut(s) 99, 137, 339
Hsp92II CATG 2 cut(s) 312, 518
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 2 cut(s) 204, 352
LmnI GCTCC 2 cut(s) 246, 398
LpnPI CCDG 9 cut(s) 74, 192, 208, 221, 236, 264, 332, 411, 522
Lsp1109I GCAGC 2 cut(s) 262, 285
LweI GCATC 1 cut(s) 64
MaeI CTAG 3 cut(s) 404, 413, 554
MaeII ACGT 3 cut(s) 99, 137, 339
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 206, 354
MboI GATC 2 cut(s) 204, 352
MboII GAAGA 3 cut(s) 419, 563, 585
MluCI AATT 7 cut(s) 89, 200, 246, 323, 417, 566, 587
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 3 cut(s) 27, 109, 352
MseI TTAA 4 cut(s) 140, 249, 368, 601
MwoI GCNNNNNNNGC 3 cut(s) 195, 281, 295
NdeII GATC 2 cut(s) 204, 352
NlaIII CATG 2 cut(s) 312, 518
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 518
PciI ACATGT 1 cut(s) 514
PfeI GAWTC 2 cut(s) 4, 30
PkrI GCNGC 2 cut(s) 277, 300
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PscI ACATGT 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 283
RsaI GTAC 2 cut(s) 269, 460
RsaNI GTAC 2 cut(s) 268, 459
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 4 cut(s) 140, 249, 368, 601
SatI GCNGC 2 cut(s) 276, 299
Sau3AI GATC 2 cut(s) 204, 352
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 1 cut(s) 167
SfaNI GCATC 1 cut(s) 64
SmlI CTYRAG 2 cut(s) 23, 65
SmoI CTYRAG 2 cut(s) 23, 65
Sse9I AATT 7 cut(s) 89, 200, 246, 323, 417, 566, 587
SspMI CTAG 3 cut(s) 404, 413, 554
TaaI ACNGT 4 cut(s) 47, 53, 463, 488
TaiI ACGT 3 cut(s) 102, 140, 342
TaqI TCGA 2 cut(s) 171, 596
TasI AATT 7 cut(s) 89, 200, 246, 323, 417, 566, 587
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 4, 30
Tru1I TTAA 4 cut(s) 140, 249, 368, 601
Tru9I TTAA 4 cut(s) 140, 249, 368, 601
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 275, 298
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 459, 486
TspRI CASTG 1 cut(s) 468
XapI RAATTY 2 cut(s) 323, 417
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 3 cut(s) 404, 413, 554
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.