Rmu_sc0002393.1_g000037

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002393.1
OG0000103
Physical Location & Seq
Forward (+)
161358 .. 162062
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002393.1_g000037.1.cds

Sequence Viewer

Length: 705 bp
atggttccagatcttgtgtttgatgaactgggtttcctaggagtactttataagcatgacaaattagtgaaaatggttgatcatgtgctcttccttcacattggtccaataaacaaggtcaagctttctcatacaggtcttaagggcacagcagatattgatagatggattctttatctatcaagaaattctatgaaagagttcatatttaagttttggaaaaagcctgaatgcaagatgccttcatgtttgttttcctgtcaagatttggttcatttggaattgtgcaattgtttcctaaaacctccgcgcacattcaagggcttcaagagtttgaagaaacttgaaattgagagtgttaccctgacccaagatgagtttgaaaatctaattgtttgttgtcctctgctgaaatatttgaccatgatagattgtcgtggtttcaccaagctcaagattgatgcaccaaatctccaaatcttttgccttctaggtgcttttgaggatcttggttttcagaacaccttaaagcttacaactattgccatttatttaacagctaatggtgaccaaagaagacagaaacctggcagttctagcaatttgctcaagctttttgatcagtgtgcttatgttcaaactgcttatattcttggttactttttaaaggtaatttttcatgatggtatcgtatcatacttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

234

Amino Acids

26.94

Weight (kDa)

8.72

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AccII CGCG 1 cut(s) 310
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 1 cut(s) 45
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 6 cut(s) 319, 328, 337, 347, 383, 638
AjnI CCWGG 1 cut(s) 586
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 5 cut(s) 124, 451, 532, 560, 613
AluI AGCT 5 cut(s) 124, 451, 532, 560, 613
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 513
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 200
AspA2I CCTAGG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 436, 578
AvaII GGWCC 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 2 cut(s) 159, 677
BciT130I CCWGG 1 cut(s) 588
BclI TGATCA 2 cut(s) 79, 619
BfaI CTAG 3 cut(s) 38, 491, 597
BfrI CTTAAG 1 cut(s) 140
BglII AGATCT 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 588
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 588
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 228, 451
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 583
BpuEI CTTGAG 2 cut(s) 437, 593
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 90, 149
Bsp143I GATC 4 cut(s) 10, 79, 505, 619
BspACI CCGC 1 cut(s) 308
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 513
BspQI GCTCTTC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 4 cut(s) 10, 79, 505, 619
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 95
BstAFI CTTAAG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 566
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 4 cut(s) 13, 82, 508, 622
BstMBI GATC 4 cut(s) 10, 79, 505, 619
BstMWI GCNNNNNNNGC 1 cut(s) 597
BstNI CCWGG 1 cut(s) 588
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 2 cut(s) 10, 505
BstYI RGATCY 2 cut(s) 10, 505
BtsIMutI CAGTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 44
CviAII CATG 5 cut(s) 56, 83, 246, 424, 680
CviJI RGCY 7 cut(s) 124, 226, 324, 451, 532, 560, 613
CviKI_1 RGCY 7 cut(s) 124, 226, 324, 451, 532, 560, 613
CviQI GTAC 1 cut(s) 44
DpnI GATC 4 cut(s) 12, 81, 507, 621
DpnII GATC 4 cut(s) 10, 79, 505, 619
DraI TTTAAA 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 566
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 5 cut(s) 59, 86, 249, 427, 683
FatI CATG 5 cut(s) 55, 82, 245, 423, 679
FbaI TGATCA 2 cut(s) 79, 619
FspBI CTAG 3 cut(s) 38, 491, 597
GlaI GCGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 312
Hin1II CATG 5 cut(s) 59, 86, 249, 427, 683
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HindIII AAGCTT 3 cut(s) 122, 530, 611
HinfI GANTC 1 cut(s) 169
HphI GGTGA 2 cut(s) 436, 578
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 6 cut(s) 8, 183, 263, 328, 454, 680
HpyAV CCTTC 3 cut(s) 104, 252, 497
HpyCH4V TGCA 3 cut(s) 234, 288, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 597
Hsp92II CATG 5 cut(s) 59, 86, 249, 427, 683
HspAI GCGC 1 cut(s) 310
Ksp22I TGATCA 2 cut(s) 79, 619
Kzo9I GATC 4 cut(s) 10, 79, 505, 619
LguI GCTCTTC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 14, 21, 120, 240, 271, 377, 573, 600
LweI GCATC 2 cut(s) 228, 451
MaeI CTAG 3 cut(s) 38, 491, 597
MaeIII GTNAC 3 cut(s) 358, 566, 656
MalI GATC 4 cut(s) 12, 81, 507, 621
MboI GATC 4 cut(s) 10, 79, 505, 619
MboII GAAGA 3 cut(s) 82, 349, 588
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 2 cut(s) 10, 505
MhlI GDGCHC 2 cut(s) 90, 149
MluCI AATT 8 cut(s) 62, 187, 281, 289, 348, 390, 601, 672
MnlI CCTC 3 cut(s) 315, 414, 496
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 6 cut(s) 141, 210, 527, 554, 665, 703
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 588
MunI CAATTG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 597
NdeII GATC 4 cut(s) 10, 79, 505, 619
NlaIII CATG 5 cut(s) 59, 86, 249, 427, 683
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 566
PagI TCATGA 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 95
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 586
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 2 cut(s) 10, 505
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 6 cut(s) 141, 210, 527, 554, 665, 703
Sau3AI GATC 4 cut(s) 10, 79, 505, 619
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 2 cut(s) 90, 149
SfaNI GCATC 2 cut(s) 228, 451
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 3 cut(s) 140, 452, 608
SmoI CTYRAG 3 cut(s) 140, 452, 608
Sse9I AATT 8 cut(s) 62, 187, 281, 289, 348, 390, 601, 672
SsiI CCGC 1 cut(s) 308
SspI AATATT 1 cut(s) 416
SspMI CTAG 3 cut(s) 38, 491, 597
StyD4I CCNGG 1 cut(s) 586
StyI CCWWGG 1 cut(s) 37
TasI AATT 8 cut(s) 62, 187, 281, 289, 348, 390, 601, 672
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 6 cut(s) 141, 210, 527, 554, 665, 703
Tru9I TTAA 6 cut(s) 141, 210, 527, 554, 665, 703
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 6 cut(s) 39, 193, 209, 234, 263, 668
TspRI CASTG 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 3 cut(s) 38, 491, 597
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.