RchiOBHm_Chr6g0295981

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000103
Physical Location & Seq
Forward (+)
57797143 .. 57797479
337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26565

Sequence Viewer

Length: 333 bp
ATGGAGTTGGATAGAATTAGCAACTTACCGAGGGATCTTGCAGAAAAGATATTGTCACTTTTGCCAATTAGGGATGCAGTGAGGACGAGTGTTTTATCAACTAAGTGGAGGTACAAATCAGCTATGCTACCACATCTGGTGTTTGATGCTCCGCAACAAACATTTGCTGATGTTGTTGATCATGTACTCTTAAGTCACATCGGCCCCTTATACAAGTTCAAGATTGTTAAAAAATATATATACTTTAGAGATATGGATCGGTGGATACTTCACATGTCAAGAAACGTACTCCATCAAAGAGTTCACACTCGAACAACGGGGAAATCGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

110

Amino Acids

13.0

Weight (kDa)

10.13

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 39 4.1e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 42, 264
AfaI GTAC 3 cut(s) 113, 186, 288
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 2 cut(s) 42, 264
AoxI GGCC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 203
BccI CCATC 1 cut(s) 300
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 190
BfuI GTATCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 2 cut(s) 64, 136
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 255
BshFI GGCC 1 cut(s) 204
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 34, 178, 256
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 2 cut(s) 42, 264
BspTI CTTAAG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 34, 178, 256
BstAFI CTTAAG 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 3 cut(s) 37, 181, 259
BstMBI GATC 3 cut(s) 34, 178, 256
BstNSI RCATGY 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 112, 185, 287
CviAII CATG 2 cut(s) 182, 274
CviJI RGCY 2 cut(s) 122, 204
CviKI_1 RGCY 2 cut(s) 122, 204
CviQI GTAC 3 cut(s) 112, 185, 287
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 36, 180, 258
DpnII GATC 3 cut(s) 34, 178, 256
FaeI CATG 2 cut(s) 185, 277
FaiI YATR 9 cut(s) 125, 183, 211, 237, 239, 241, 254, 275, 331
FatI CATG 2 cut(s) 181, 273
FbaI TGATCA 1 cut(s) 178
FokI GGATG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 185, 277
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 220, 279
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 41, 77
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 185, 277
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 34, 178, 256
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 122
LweI GCATC 2 cut(s) 64, 136
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 54, 194
MalI GATC 3 cut(s) 36, 180, 258
MboI GATC 3 cut(s) 34, 178, 256
MflI RGATCY 1 cut(s) 34
MluCI AATT 2 cut(s) 15, 66
MnlI CCTC 3 cut(s) 24, 75, 102
MseI TTAA 2 cut(s) 191, 228
MspCI CTTAAG 1 cut(s) 190
NdeII GATC 3 cut(s) 34, 178, 256
NlaIII CATG 2 cut(s) 185, 277
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 54, 194
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PscI ACATGT 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 3 cut(s) 113, 186, 288
RsaNI GTAC 3 cut(s) 112, 185, 287
SaqAI TTAA 2 cut(s) 191, 228
Sau3AI GATC 3 cut(s) 34, 178, 256
Sau96I GGNCC 1 cut(s) 203
SetI ASST 3 cut(s) 113, 124, 288
SfaNI GCATC 2 cut(s) 64, 136
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 15, 66
SsiI CCGC 1 cut(s) 152
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 310
TasI AATT 2 cut(s) 15, 66
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 2 cut(s) 191, 228
Tru9I TTAA 2 cut(s) 191, 228
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 54, 194
Tsp45I GTSAC 2 cut(s) 54, 194
TspRI CASTG 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 190
XceI RCATGY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.