Rroxscaffold_7G00212860

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000103
Physical Location & Seq
Reverse (-)
63399792 .. 63401043
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212860.1

Sequence Viewer

Length: 903 bp
ATGGTTGATCATGTGCTCTTCCTTCACATTGGTCCAATAAACAAGGTCAAGCTTTCTCATAAAGGTCTTAATGGCACCGCAGATATTGCTAGATGGATTCTTCATCTATCAAGAAATTCTATGAAAGAGTTCATATTTAAGTTTCGGCAAAAGCCTGAATACAAGATGCCTTCATGTTTGTTTTCCTGTCAAGATTTGGTTCATTTGGAATTGTGTAATTGTTTGCTAAAACCTCCACGCACATTCAAGGGCTTCAAGAGTTTGAAGAAACTTGATATTGAAAGTGTTACCGTGACCCAAGATGAGTTTGAAAATCTAATTGTTTGTTGTCTTCTGCTGAAATATTTGACCATGATAGATTGTCGTGGTTTCACCAAGCTCAAGATTGATGCACCAAATCTCCGAATCTTTTGCGTTATAGGTGCTTTTGAGGATCTTAGTTTTCAGAACACCTTAAATCTTACAAGTATTGCCATTTATTTAACAGCTAATGGTGACCAAAGAAGACAGAAACCTGGCAGTTCTAGCAATTTGCTCAAGCTTTTTTATCAGTGTGCTTATGTTCAAACTGCTTATATTCTTGGTTACTTTTTAAAGTATTTAGCTGTTGGTGACTTGCCTGTAAAGCGTCCTGAACCATTTCTGCATCTGAAGTTGCTTCGTATAAACATAGATTTCAATGATCTGAAGGAGGTTCGTCAAGAGGGACAGGCTCTTGTGGGAGAGGTGAACTCTTGGTTAGATGGCAACCAGAATTTCCAACTCGGAAAACTGCAAATTATGGAAGTACATGGCATCACTAGCACCAAAGCTGTACTAGATTTCATTAAATTTCTGCTTTTAAATTCACCGATGCTCGAGAAGGTGTTTGTTAAGCCCGCATCTCGCTATGGTTCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

300

Amino Acids

34.32

Weight (kDa)

9.18

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 27 - 141 2.9e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 30 - 170 1.3e-16 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 2 cut(s) 78, 879
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 4 cut(s) 115, 754, 830, 844
AcuI CTGAAG 2 cut(s) 671, 707
AfaI GTAC 2 cut(s) 789, 816
AgsI TTSAA 7 cut(s) 247, 256, 265, 281, 311, 566, 679
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 6 cut(s) 52, 379, 488, 541, 605, 812
AluI AGCT 6 cut(s) 52, 379, 488, 541, 605, 812
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 441
Ama87I CYCGRG 1 cut(s) 857
ApoI RAATTY 4 cut(s) 115, 754, 830, 844
Asp700I GAANNNNTTC 2 cut(s) 128, 639
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 5 cut(s) 364, 506, 623, 739, 840
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 323, 511
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 2 cut(s) 87, 737
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 1 cut(s) 7
BfaI CTAG 4 cut(s) 90, 525, 801, 818
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 857
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 6 cut(s) 156, 379, 655, 804, 843, 890
BpiI GAAGAC 2 cut(s) 323, 511
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpuEI CTTGAG 2 cut(s) 365, 521
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
BseBI CCWGG 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 857
BslFI GGGAC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 720
BsoBI CYCGRG 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 7, 433, 682
BspACI CCGC 2 cut(s) 78, 879
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 441
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 74
BssMI GATC 3 cut(s) 7, 433, 682
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 1 cut(s) 437
BstEII GGTNACC 1 cut(s) 494
BstKTI GATC 3 cut(s) 10, 436, 685
BstMBI GATC 3 cut(s) 7, 433, 682
BstMWI GCNNNNNNNGC 4 cut(s) 86, 525, 625, 801
BstNI CCWGG 1 cut(s) 516
BstPI GGTNACC 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 514
BstV2I GAAGAC 2 cut(s) 323, 511
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 557
Cac8I GCNNGC 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 788, 815
CviAII CATG 4 cut(s) 11, 174, 352, 791
CviQI GTAC 2 cut(s) 788, 815
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 9, 435, 684
DpnII GATC 3 cut(s) 7, 433, 682
DraI TTTAAA 2 cut(s) 594, 843
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 671, 707
Eco88I CYCGRG 1 cut(s) 857
Eco91I GGTNACC 1 cut(s) 494
EcoO65I GGTNACC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 14, 177, 355, 794
FaqI GGGAC 1 cut(s) 720
FatI CATG 4 cut(s) 10, 173, 351, 790
FauI CCCGC 1 cut(s) 886
FbaI TGATCA 1 cut(s) 7
FspBI CTAG 4 cut(s) 90, 525, 801, 818
HgaI GACGC 1 cut(s) 617
Hin1II CATG 4 cut(s) 14, 177, 355, 794
HindIII AAGCTT 2 cut(s) 50, 539
HinfI GANTC 2 cut(s) 97, 405
HphI GGTGA 5 cut(s) 364, 506, 623, 739, 840
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 5 cut(s) 404, 447, 651, 687, 767
Hpy188III TCNNGA 7 cut(s) 111, 191, 256, 382, 632, 701, 859
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 32, 180, 682, 856
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 392, 646, 775
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 525, 625, 801
HpyF3I CTNAG 1 cut(s) 437
Hsp92II CATG 4 cut(s) 14, 177, 355, 794
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 433, 682
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 168, 199, 501, 528, 633, 645, 695, 764
LweI GCATC 6 cut(s) 156, 379, 655, 804, 843, 890
MaeI CTAG 4 cut(s) 90, 525, 801, 818
MaeIII GTNAC 5 cut(s) 286, 292, 494, 584, 611
MalI GATC 3 cut(s) 9, 435, 684
MboI GATC 3 cut(s) 7, 433, 682
MboII GAAGA 6 cut(s) 10, 92, 277, 323, 516, 888
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 9 cut(s) 115, 209, 217, 318, 529, 754, 777, 830, 844
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 5 cut(s) 243, 424, 685, 697, 718
MroXI GAANNNNTTC 2 cut(s) 128, 639
MseI TTAA 8 cut(s) 69, 138, 455, 482, 593, 828, 842, 873
MspR9I CCNGG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 4 cut(s) 86, 525, 625, 801
NdeII GATC 3 cut(s) 7, 433, 682
NlaIII CATG 4 cut(s) 14, 177, 355, 794
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 3 cut(s) 292, 494, 611
PaeR7I CTCGAG 1 cut(s) 857
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 2 cut(s) 128, 639
PfeI GAWTC 2 cut(s) 97, 405
Psp6I CCWGG 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 2 cut(s) 789, 816
RsaNI GTAC 2 cut(s) 788, 815
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 8 cut(s) 69, 138, 455, 482, 593, 828, 842, 873
Sau3AI GATC 3 cut(s) 7, 433, 682
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 6 cut(s) 156, 379, 655, 804, 843, 890
Sfr274I CTCGAG 1 cut(s) 857
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 857
SmlI CTYRAG 3 cut(s) 380, 536, 857
SmoI CTYRAG 3 cut(s) 380, 536, 857
Sse9I AATT 9 cut(s) 115, 209, 217, 318, 529, 754, 777, 830, 844
SsiI CCGC 2 cut(s) 78, 879
SspI AATATT 1 cut(s) 344
SspMI CTAG 4 cut(s) 90, 525, 801, 818
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 858
TasI AATT 9 cut(s) 115, 209, 217, 318, 529, 754, 777, 830, 844
TatI WGTACW 2 cut(s) 787, 814
TfiI GAWTC 2 cut(s) 97, 405
Tru1I TTAA 8 cut(s) 69, 138, 455, 482, 593, 828, 842, 873
Tru9I TTAA 8 cut(s) 69, 138, 455, 482, 593, 828, 842, 873
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 3 cut(s) 292, 494, 611
Tsp45I GTSAC 3 cut(s) 292, 494, 611
TspDTI ATGAA 6 cut(s) 92, 121, 137, 162, 191, 814
TspRI CASTG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 4 cut(s) 115, 754, 830, 844
XhoI CTCGAG 1 cut(s) 857
XmnI GAANNNNTTC 2 cut(s) 128, 639
XspI CTAG 4 cut(s) 90, 525, 801, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.