Rorug06G0255900

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000103
Physical Location & Seq
Forward (+)
40209557 .. 40216064
6508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0255900.1

Sequence Viewer

Length: 657 bp
ATGGATCCTGAAGGAGCAAAGTTTGGAAGAGGACCAAGAGAGCTGACTGGTGCCGTAGATCTCATAAGTCACTACAAATTGCAAGCACACCATGAGTTTTTCTGCAAGCGTTCGCTTCCTGTATCAATTTCAGACACACACTATACCCACAATGTGGTGGGAGACACAGAAATCAGAAAAGGAGACGGAATGCAATTGGATCAACTTATTCAGAGTACATATTCCAGGGATACTAAACCTCGAATACAGCCTTTTGACCTAGATATTCTCAGAGAGGCCTTCCAACTTAAAGAGACTGCTCCTATTGATTTGCCATCTGCAGATAAGGGGACTCCAACTATAGCAGGGAAATCAAAGAGTGGGTCTAAAGACAAGGAGAGGAAACACAAAAAGCACAGAGACAAAGACAGAGACAAAGATAAGGAGAAGGAGAAAGAACATAAGAAGCACAAACACCGGCATAGAGATCGAAGTAAAGATAAAGACAAGGAGAAGAAAAAGGAGAAACATGATTCGGCGGGTGATCCCTCAAAGAAACATGAAAAGAAAAGGAAACATGATGGAGATGAAGATCTTAATGATGTTCAGAGACACAAAAAAAGTAAGCATAAGAGCTCAAAACTAGATGAAGTTGGTGTGATCAAAGTAGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

218

Amino Acids

25.11

Weight (kDa)

9.6

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 154
AciI CCGC 1 cut(s) 518
AclWI GGATC 3 cut(s) 12, 207, 518
AcuI CTGAAG 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 154
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 43, 615, 650
AluI AGCT 3 cut(s) 43, 615, 650
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 6 cut(s) 156, 177, 287, 393, 405, 583
AlwI GGATC 3 cut(s) 12, 207, 518
AoxI GGCC 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 617
BccI CCATC 2 cut(s) 322, 554
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 223
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 6 cut(s) 156, 177, 287, 393, 405, 583
BfaI CTAG 2 cut(s) 260, 623
BfmI CTRYAG 2 cut(s) 318, 339
BfuI GTATCC 1 cut(s) 223
BglII AGATCT 2 cut(s) 58, 571
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 6, 52
BmrFI CCNGG 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 52
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 1 cut(s) 457
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 6 cut(s) 156, 177, 287, 393, 405, 583
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 6, 52
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 12, 207, 518
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 84, 107, 652
BstDEI CTNAG 1 cut(s) 269
BstKTI GATC 7 cut(s) 7, 61, 202, 469, 526, 574, 642
BstMAI GTCTC 6 cut(s) 156, 177, 287, 393, 405, 583
BstMBI GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 2 cut(s) 318, 339
BstX2I RGATCY 3 cut(s) 4, 58, 571
BstYI RGATCY 3 cut(s) 4, 58, 571
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 84, 107, 652
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 216
CviAII CATG 4 cut(s) 92, 509, 539, 557
CviJI RGCY 6 cut(s) 43, 250, 278, 615, 650, 654
CviKI_1 RGCY 6 cut(s) 43, 250, 278, 615, 650, 654
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 269
DpnI GATC 7 cut(s) 6, 60, 201, 468, 525, 573, 641
DpnII GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
DraIII CACNNNGTG 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 615
Eco147I AGGCCT 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 615
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 617
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 4 cut(s) 95, 512, 542, 560
FaqI GGGAC 1 cut(s) 343
FatI CATG 4 cut(s) 91, 508, 538, 556
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 1 cut(s) 639
FriOI GRGCYC 1 cut(s) 617
FspBI CTAG 2 cut(s) 260, 623
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 457
Hin1II CATG 4 cut(s) 95, 512, 542, 560
HinfI GANTC 2 cut(s) 331, 512
HpaII CCGG 1 cut(s) 457
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 5 cut(s) 133, 176, 213, 272, 588
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 3 cut(s) 5, 289, 421
HpyCH4V TGCA 4 cut(s) 82, 105, 193, 320
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 4 cut(s) 95, 512, 542, 560
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
LmnI GCTCC 2 cut(s) 14, 304
LpnPI CCDG 8 cut(s) 21, 33, 132, 211, 238, 330, 470, 636
MaeI CTAG 2 cut(s) 260, 623
MaeIII GTNAC 1 cut(s) 68
MalI GATC 7 cut(s) 6, 60, 201, 468, 525, 573, 641
MboI GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
MboII GAAGA 3 cut(s) 39, 505, 581
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 3 cut(s) 4, 58, 571
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 3 cut(s) 77, 126, 194
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 307, 359
MnlI CCTC 5 cut(s) 23, 249, 268, 372, 538
MseI TTAA 2 cut(s) 288, 576
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 226
NdeII GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
NlaIII CATG 4 cut(s) 95, 512, 542, 560
NlaIV GGNNCC 2 cut(s) 6, 52
NmuCI GTSAC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 278
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 154
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 6, 52
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 3 cut(s) 4, 58, 571
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SacI GAGCTC 1 cut(s) 617
SaqAI TTAA 2 cut(s) 288, 576
Sau3AI GATC 7 cut(s) 4, 58, 199, 466, 523, 571, 639
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 617
SetI ASST 5 cut(s) 45, 241, 261, 617, 652
SfcI CTRYAG 2 cut(s) 318, 339
SinI GGWCC 1 cut(s) 32
Sse9I AATT 3 cut(s) 77, 126, 194
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 260, 623
SstI GAGCTC 1 cut(s) 617
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 224
TaqI TCGA 2 cut(s) 241, 469
TasI AATT 3 cut(s) 77, 126, 194
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 2 cut(s) 288, 576
Tru9I TTAA 2 cut(s) 288, 576
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 555, 582, 642
TspGWI ACGGA 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 32
XspI CTAG 2 cut(s) 260, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.