MD05G1104400.v1.1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000103
Physical Location & Seq
Forward (+)
21719718 .. 21720556
839 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1104400.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGCTCAAGACATGTTTGATAATCTGATTGTTTCATGTCCTCTTCTTGAGAGATTGATTATGAGCATATGTGATGGTTTTACCCACCTCAATGTTGACGCACCAAATCTCCAATACTTTGCGTTTGGAGGCTCTTTTGAGACTGTTAATCTTGAGAATACACTAAATCTTGTTGAAGTTGACATTAATTTTTGCAATGAGGACCTTAGATGGATTCTCACAGCTCTAGCCATTTGGTCAAGTTTCTTGATCGACTGCCCTGTATTCAGAGGCTCACAATTCAGATATTTGTCTGTTGGTGCCTTGCCCCAAAAGCTGCCCCAACCTTGTCTATATCTGAGGTTTCTTTCTATAACCATTGACTTCTGCTATCTGAATGAAGTTTTAACTGCTCATTGCCTTCTAAGAAGCTCCCCTGCTCTACAAGTACTCGAAGTTCAAGCCTGTGGTTATGGCATGGCAGCTGAGCAAGAAGTGAAGTCTTGGTTTGATGACAATCAGAACTTCCAATTTAGCCAACTGATTCCACAACTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

180

Amino Acids

20.38

Weight (kDa)

4.3

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AfaI GTAC 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 2 cut(s) 176, 440
AluBI AGCT 4 cut(s) 224, 316, 411, 464
AluI AGCT 4 cut(s) 224, 316, 411, 464
Alw26I GTCTC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 316, 461
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 303, 473
BccI CCATC 2 cut(s) 68, 204
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 227, 538
BisI GCNGC 2 cut(s) 317, 462
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 2 cut(s) 318, 463
BmcAI AGTACT 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 68, 173
BsaBI GATNNNNATC 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse3DI GCAATG 2 cut(s) 202, 394
Bse8I GATNNNNATC 1 cut(s) 495
BseJI GATNNNNATC 1 cut(s) 495
BseMI GCAATG 2 cut(s) 202, 394
BseMII CTCAG 2 cut(s) 329, 456
BseXI GCAGC 2 cut(s) 303, 473
BshNI GGYRCC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 330, 457
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 202, 394
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 48
BstDEI CTNAG 4 cut(s) 206, 338, 404, 465
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 303, 473
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 428
CviAII CATG 3 cut(s) 13, 36, 457
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 4 cut(s) 206, 338, 404, 465
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 202
FaeI CATG 3 cut(s) 16, 39, 460
FaiI YATR 9 cut(s) 14, 37, 62, 68, 70, 334, 353, 453, 458
FatI CATG 3 cut(s) 12, 35, 456
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 317, 462
Fsp4HI GCNGC 2 cut(s) 317, 462
FspBI CTAG 2 cut(s) 227, 538
GluI GCNGC 2 cut(s) 317, 462
HgaI GACGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 16, 39, 460
HincII GTYRAC 2 cut(s) 97, 181
HindII GTYRAC 2 cut(s) 97, 181
HinfI GANTC 2 cut(s) 214, 523
Hpy166II GTNNAC 2 cut(s) 97, 181
Hpy188I TCNGA 6 cut(s) 27, 269, 284, 339, 375, 501
Hpy188III TCNNGA 4 cut(s) 8, 47, 152, 247
Hpy8I GTNNAC 2 cut(s) 97, 181
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 4 cut(s) 206, 338, 404, 465
Hsp92II CATG 3 cut(s) 16, 39, 460
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 3 cut(s) 273, 429, 457
Lsp1109I GCAGC 2 cut(s) 303, 473
MaeI CTAG 2 cut(s) 227, 538
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 1 cut(s) 35
MluCI AATT 3 cut(s) 187, 278, 509
MnlI CCTC 6 cut(s) 51, 98, 122, 193, 263, 333
MseI TTAA 3 cut(s) 147, 186, 386
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeI CATATG 1 cut(s) 68
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 16, 39, 460
NlaIV GGNNCC 1 cut(s) 301
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 2 cut(s) 214, 523
PkrI GCNGC 2 cut(s) 318, 463
PpuMI RGGWCCY 1 cut(s) 202
PscI ACATGT 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 3 cut(s) 147, 186, 386
SatI GCNGC 2 cut(s) 317, 462
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 202
ScaI AGTACT 1 cut(s) 429
SetI ASST 8 cut(s) 90, 207, 226, 318, 328, 344, 413, 466
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 3 cut(s) 6, 47, 152
SmoI CTYRAG 3 cut(s) 6, 47, 152
Sse9I AATT 3 cut(s) 187, 278, 509
SspMI CTAG 2 cut(s) 227, 538
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 252, 432
TasI AATT 3 cut(s) 187, 278, 509
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 2 cut(s) 214, 523
Tru1I TTAA 3 cut(s) 147, 186, 386
Tru9I TTAA 3 cut(s) 147, 186, 386
TseI GCWGC 2 cut(s) 316, 461
TspDTI ATGAA 2 cut(s) 24, 393
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 1 cut(s) 16
XspI CTAG 2 cut(s) 227, 538
ZrmI AGTACT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.