RLG00000011747

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
12369371 .. 12369782
412 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011747

Sequence Viewer

Length: 336 bp
ATGGCCCAAGATGTGTTCGAACATTTGATTGTTTGTTCTCCTCTGCTTGAGAGATTGACTCTGAGGGACTGTGACGGTTTCAGCCAACTCAAGATTGATGCACCGAATCTCCAATTTCTTGATGTTAGGGATTCCTTGGCTCCTTGGAGTTCTGGCGGTTTGATCAAGTTTTTTGATGACCTGCCTCTTCTTCAGAGTCTCCAAATTAACTGGTACTTTTTGAAGTATTTGGCTGGTGATGCCTTGCCAAAAAAGCAGCCTAAACCGTGTCTACATCTGAAATTTCTTCGCTTTAATGATCTGGAAGAAATATTTCAACTGCTCTTTGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.87

Weight (kDa)

5.2

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 271
AciI CCGC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 2 cut(s) 223, 317
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 248
AsuII TTCGAA 1 cut(s) 18
BbvI GCAGC 1 cut(s) 268
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 189
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 2 cut(s) 88, 229
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu14I TTCGAA 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 68, 74
BsaJI CCNNGG 2 cut(s) 135, 143
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 135, 143
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 162, 298
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 135, 143
BssMI GATC 2 cut(s) 162, 298
BssT1I CCWWGG 2 cut(s) 135, 143
Bst4CI ACNGT 3 cut(s) 71, 77, 267
Bst6I CTCTTC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 62
BstKTI GATC 2 cut(s) 165, 301
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 162, 298
BstMWI GCNNNNNNNGC 2 cut(s) 239, 253
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 5 cut(s) 5, 84, 140, 233, 259
CviKI_1 RGCY 5 cut(s) 5, 84, 140, 233, 259
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 164, 300
DpnII GATC 2 cut(s) 162, 298
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 135, 143
Eco57I CTGAAG 1 cut(s) 176
EcoT14I CCWWGG 2 cut(s) 135, 143
ErhI CCWWGG 2 cut(s) 135, 143
FaiI YATR 1 cut(s) 334
FaqI GGGAC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 4 cut(s) 58, 106, 131, 196
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 63, 195, 279
Hpy188III TCNNGA 3 cut(s) 91, 119, 302
Hpy8I GTNNAC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 71, 77, 267
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 253
HpyF3I CTNAG 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 162, 298
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 138, 194, 196, 219, 287
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 88, 229
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 164, 300
MboI GATC 2 cut(s) 162, 298
MboII GAAGA 4 cut(s) 179, 182, 278, 317
MluCI AATT 3 cut(s) 113, 204, 281
MlyI GAGTC 2 cut(s) 52, 205
MnlI CCTC 3 cut(s) 51, 57, 195
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 2 cut(s) 207, 294
MwoI GCNNNNNNNGC 2 cut(s) 239, 253
NdeII GATC 2 cut(s) 162, 298
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 71
NspV TTCGAA 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 106, 131
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 2 cut(s) 52, 204
PpsI GAGTC 2 cut(s) 52, 204
PsiI TTATAA 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 207, 294
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 162, 298
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 52, 205
SetI ASST 1 cut(s) 183
SfaNI GCATC 2 cut(s) 88, 229
SfuI TTCGAA 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 47, 89
SmoI CTYRAG 2 cut(s) 47, 89
Sse9I AATT 3 cut(s) 113, 204, 281
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 312
StyI CCWWGG 2 cut(s) 135, 143
TaaI ACNGT 3 cut(s) 71, 77, 267
TaqI TCGA 1 cut(s) 18
TasI AATT 3 cut(s) 113, 204, 281
TfiI GAWTC 2 cut(s) 106, 131
Tru1I TTAA 2 cut(s) 207, 294
Tru9I TTAA 2 cut(s) 207, 294
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 71
XapI RAATTY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.