Rh7CG053500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000103
Physical Location & Seq
Reverse (-)
3878595 .. 3879340
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG053500.1

Sequence Viewer

Length: 516 bp
ATGGGTTGTTGGCGGTTCATCCATGCCAATTTGGTCAAGTTTTTCGTTCACCTACCTAATATTCGTGACCTTCAAATTTCAGGTTATGTTTTAAAGTATTTGGCTGTTGGTCCCTTGCTACGAAAGCTGCCTCAACCAATACTGTTTCTGAATGATCTTTATATGGACGTAAACTTCACTGATCTGGAGGAGATTACAACTGCTCTATGCCTTGTAAGAAGCTCCCCTGCTCTACGAAAACTGGAGATTGTGGTCAACCATATTGATTATCATCATGTTGTGGGAGAAGTGAACTCCTGGTTTGAAAATTTAGGCGAAAACTCAGATTGTCAACTCACTGAACTTCGACGTATAGATATTGTTGCCATCTCTGATGCCAAAGCTGAACTAGATTTTATCAAATTGCTGCTGTTAAGTTCACCTGTACTGGAGTGCATGACTCTTAAGCCTTTTTCTGTGGATGGCTCTTTGGAACTGTTAAAACAGGTGGTCCAGTTTAGGCGTGCCTCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

5.93

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 75, 307
AfaI GTAC 1 cut(s) 426
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 74, 305
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 3 cut(s) 127, 222, 383
AluI AGCT 3 cut(s) 127, 222, 383
ApeKI GCWGC 2 cut(s) 127, 406
ApoI RAATTY 2 cut(s) 75, 307
AspS9I GGNCC 2 cut(s) 110, 490
AsuHPI GGTGA 2 cut(s) 41, 411
AvaII GGWCC 2 cut(s) 110, 490
BbvI GCAGC 2 cut(s) 114, 393
BccI CCATC 2 cut(s) 374, 455
BciT130I CCWGG 1 cut(s) 298
BfaI CTAG 1 cut(s) 389
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 2 cut(s) 128, 407
BlsI GCNGC 2 cut(s) 129, 408
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 2 cut(s) 110, 490
BmgT120I GGNCC 2 cut(s) 110, 490
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 3 cut(s) 206, 263, 449
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 507
Bse1I ACTGG 3 cut(s) 246, 432, 493
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 18, 466
BseJI GATNNNNATC 1 cut(s) 270
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 246, 432, 493
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 114, 393
BslFI GGGAC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 154, 181
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 443
BsrI ACTGG 3 cut(s) 246, 432, 493
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 2 cut(s) 154, 181
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 144, 477
BstAFI CTTAAG 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 18, 466
BstKTI GATC 2 cut(s) 157, 184
BstMBI GATC 2 cut(s) 154, 181
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 114, 393
BtsCI GGATG 2 cut(s) 18, 466
BtsIMutI CAGTG 2 cut(s) 177, 336
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 110, 490
Csp6I GTAC 1 cut(s) 425
CviAII CATG 3 cut(s) 23, 275, 436
CviJI RGCY 6 cut(s) 104, 127, 222, 383, 448, 465
CviKI_1 RGCY 6 cut(s) 104, 127, 222, 383, 448, 465
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 322
DpnI GATC 2 cut(s) 156, 183
DpnII GATC 2 cut(s) 154, 181
DraI TTTAAA 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 110, 490
EcoRII CCWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 26, 278, 439
FaiI YATR 9 cut(s) 24, 87, 162, 164, 208, 261, 276, 353, 437
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 22, 274, 435
Fnu4HI GCNGC 2 cut(s) 128, 407
FokI GGATG 2 cut(s) 5, 473
Fsp4HI GCNGC 2 cut(s) 128, 407
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 128, 407
GsuI CTGGAG 3 cut(s) 206, 263, 449
Hin1II CATG 3 cut(s) 26, 278, 439
HincII GTYRAC 2 cut(s) 256, 332
HindII GTYRAC 2 cut(s) 256, 332
HinfI GANTC 1 cut(s) 439
HphI GGTGA 2 cut(s) 41, 411
Hpy166II GTNNAC 6 cut(s) 49, 172, 256, 292, 332, 419
Hpy188I TCNGA 3 cut(s) 150, 325, 373
Hpy188III TCNNGA 2 cut(s) 65, 185
Hpy8I GTNNAC 6 cut(s) 49, 172, 256, 292, 332, 419
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 144, 477
HpyCH4IV ACGT 2 cut(s) 168, 349
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 2 cut(s) 168, 349
Hsp92II CATG 3 cut(s) 26, 278, 439
Kzo9I GATC 2 cut(s) 154, 181
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 2 cut(s) 114, 393
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 389
MaeII ACGT 2 cut(s) 168, 349
MaeIII GTNAC 1 cut(s) 65
MalI GATC 2 cut(s) 156, 183
MboI GATC 2 cut(s) 154, 181
MluCI AATT 4 cut(s) 28, 75, 307, 401
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 2 cut(s) 141, 181
MseI TTAA 4 cut(s) 92, 413, 444, 479
MspCI CTTAAG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 2 cut(s) 154, 181
NlaIII CATG 3 cut(s) 26, 278, 439
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 129, 408
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 110, 490
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SaqAI TTAA 4 cut(s) 92, 413, 444, 479
SatI GCNGC 2 cut(s) 128, 407
Sau3AI GATC 2 cut(s) 154, 181
Sau96I GGNCC 2 cut(s) 110, 490
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 298
SfaNI GCATC 1 cut(s) 364
SinI GGWCC 2 cut(s) 110, 490
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 4 cut(s) 28, 75, 307, 401
SsiI CCGC 1 cut(s) 13
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 144, 477
TaiI ACGT 2 cut(s) 171, 352
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 28, 75, 307, 401
TatI WGTACW 1 cut(s) 424
Tru1I TTAA 4 cut(s) 92, 413, 444, 479
Tru9I TTAA 4 cut(s) 92, 413, 444, 479
TscAI CASTG 2 cut(s) 184, 343
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 127, 406
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 2 cut(s) 184, 343
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 110, 490
XapI RAATTY 2 cut(s) 75, 307
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.