MD05G1157200.v1.1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000103
Physical Location & Seq
Forward (+)
28688361 .. 28689394
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1157200.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGAGTTGGACAGAATTAGCAACTTACCAAGTGAAGTTATAAACAAAATTTTGTTATATTTGCCAATTAAGGAAGCAGTTAGAACAAGTGTTTTATCAAGCAAGTGGAGGAACAAATCGGCTATGCTTTCTCATCTTTTGTTTGATGATCGGTGCACCTCGGATCAAAACCCTACAACCTTTACAGGCATTGTTGATCATGTACTCTTGGGTCACATTAGCCCCATATACAGGTTCAGGATCACTCATTCCCCACCTCTAGTCGGTGGAGATATTGATCGATGGATTCTTCATCTGTCAAGAAACTCTATCAAAGAGTTGTTGCTTAATATCAAATGTAGTGGGCATCTCTACAAGATGCCTTCATGTTTGTTTTCTTGTCAAGATCTCATTTATTTAGTGTTGTATGATTGTTTGCTACAACCTCCATCCAAGTTCCAAGGATTCAGGAGTTTGAAGACTTGTCGTCTTTTTAATGTTACCCTGGACCAAGATGTGCTTGAGAATCTGATTGTCTGCTGTCCTCTCCTTGAGAGATTAACATTGTGGCACTGTGATGCATTAACCCGGTTCAAGATTGATGCACCGAATCTCAAATTCCTTCATTTTAAAGGCATGCTTGAGGATGTTAGTCTTGTGAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

216

Amino Acids

24.76

Weight (kDa)

8.56

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 41 7.2e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 91 - 202 2e-13 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 92 - 211 1.5e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AclWI GGATC 2 cut(s) 171, 248
AcsI RAATTY 2 cut(s) 48, 596
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 231, 263
AgsI TTSAA 2 cut(s) 457, 574
AhdI GACNNNNNGTC 1 cut(s) 465
AjnI CCWGG 1 cut(s) 483
Alw21I GWGCWC 1 cut(s) 158
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 2 cut(s) 171, 248
ApaLI GTGCAC 1 cut(s) 154
ApoI RAATTY 2 cut(s) 48, 596
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 2 cut(s) 276, 436
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 568
BfaI CTAG 2 cut(s) 260, 646
BglII AGATCT 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 485, 568
Bme18I GGWCC 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 487
BmrFI CCNGG 2 cut(s) 485, 568
BmsI GCATC 4 cut(s) 348, 355, 547, 571
BpiI GAAGAC 1 cut(s) 464
BpuEI CTTGAG 3 cut(s) 521, 551, 641
BpuMI CCSGG 1 cut(s) 568
Bsa29I ATCGAT 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 159, 439, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 263
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 3 cut(s) 159, 439, 483
BseGI GGATG 2 cut(s) 428, 631
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 231, 263
BseSI GKGCMC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 231, 263
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 6 cut(s) 148, 163, 196, 240, 277, 385
BspDI ATCGAT 1 cut(s) 280
BspPI GGATC 2 cut(s) 171, 248
BssECI CCNNGG 3 cut(s) 159, 439, 483
BssMI GATC 6 cut(s) 148, 163, 196, 240, 277, 385
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 554
BstC8I GCNNGC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 428, 631
BstKTI GATC 6 cut(s) 151, 166, 199, 243, 280, 388
BstMBI GATC 6 cut(s) 148, 163, 196, 240, 277, 385
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 483, 566
BstSLI GKGCMC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 280
BtsCI GGATG 2 cut(s) 428, 631
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 487
ClaI ATCGAT 1 cut(s) 280
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 3 cut(s) 200, 366, 616
CviJI RGCY 2 cut(s) 122, 222
CviKI_1 RGCY 2 cut(s) 122, 222
CviQI GTAC 1 cut(s) 203
DpnI GATC 6 cut(s) 150, 165, 198, 242, 279, 387
DpnII GATC 6 cut(s) 148, 163, 196, 240, 277, 385
DraI TTTAAA 1 cut(s) 610
DriI GACNNNNNGTC 1 cut(s) 465
Eam1105I GACNNNNNGTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 3 cut(s) 203, 369, 619
FaiI YATR 9 cut(s) 41, 58, 125, 201, 227, 229, 367, 408, 617
FalI AAGNNNNNCTT 4 cut(s) 483, 515, 603, 635
FatI CATG 3 cut(s) 199, 365, 615
FbaI TGATCA 1 cut(s) 196
FokI GGATG 2 cut(s) 415, 638
FspBI CTAG 2 cut(s) 260, 646
HapII CCGG 1 cut(s) 568
Hin1II CATG 3 cut(s) 203, 369, 619
HinfI GANTC 4 cut(s) 286, 444, 505, 589
HpaII CCGG 1 cut(s) 568
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 163, 510
Hpy188III TCNNGA 5 cut(s) 238, 300, 383, 448, 574
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 372, 611
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4V TGCA 3 cut(s) 156, 560, 584
Hsp92II CATG 3 cut(s) 203, 369, 619
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 6 cut(s) 148, 163, 196, 240, 277, 385
LpnPI CCDG 7 cut(s) 171, 217, 223, 433, 470, 497, 581
LweI GCATC 4 cut(s) 348, 355, 547, 571
MaeI CTAG 2 cut(s) 260, 646
MaeIII GTNAC 2 cut(s) 212, 478
MalI GATC 6 cut(s) 150, 165, 198, 242, 279, 387
MboI GATC 6 cut(s) 148, 163, 196, 240, 277, 385
MboII GAAGA 2 cut(s) 281, 469
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 4 cut(s) 15, 48, 66, 596
MnlI CCTC 6 cut(s) 102, 169, 267, 435, 534, 616
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 6 cut(s) 69, 327, 474, 539, 563, 609
MslI CAYNNNNRTG 1 cut(s) 555
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 2 cut(s) 485, 568
MvaI CCWGG 1 cut(s) 485
NciI CCSGG 1 cut(s) 568
NdeII GATC 6 cut(s) 148, 163, 196, 240, 277, 385
NlaIII CATG 3 cut(s) 203, 369, 619
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 1 cut(s) 619
PaeI GCATGC 1 cut(s) 619
PfeI GAWTC 4 cut(s) 286, 444, 505, 589
PsiI TTATAA 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 6 cut(s) 69, 327, 474, 539, 563, 609
Sau3AI GATC 6 cut(s) 148, 163, 196, 240, 277, 385
Sau96I GGNCC 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 485, 568
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 161, 182, 236, 259, 427, 647
SfaNI GCATC 4 cut(s) 348, 355, 547, 571
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 3 cut(s) 500, 530, 620
SmoI CTYRAG 3 cut(s) 500, 530, 620
SphI GCATGC 1 cut(s) 619
Sse9I AATT 4 cut(s) 15, 48, 66, 596
SspMI CTAG 2 cut(s) 260, 646
StyD4I CCNGG 2 cut(s) 483, 566
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 1 cut(s) 280
TasI AATT 4 cut(s) 15, 48, 66, 596
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 4 cut(s) 286, 444, 505, 589
Tru1I TTAA 6 cut(s) 69, 327, 474, 539, 563, 609
Tru9I TTAA 6 cut(s) 69, 327, 474, 539, 563, 609
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 281, 354, 593
TspRI CASTG 1 cut(s) 557
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 48, 596
XceI RCATGY 1 cut(s) 619
XspI CTAG 2 cut(s) 260, 646
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.